Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5534 ATGGCTTCCAAAAACACATCTTCTCCACTTTCAAAATCCAACATGAAAACACATGCACACAACCTTTCATTATCAACAACTGCTACCAATAATTATGGAAGTCATGCTGCTGGAATCAAAAAAGCAATGAAGATTCTAGAAATTCAATTTGGGAATTCACATACATCATCAACATCGTCAACTAATAATAATGTTGTTGATGTCATCAACAACAACAATATGATGATGACGATGAATAATACTTCTTATCATTCAGATCTCATTACAGGCTCATCTAAATCACACATTATGTCATCTCAGACAATCGATTCTAGTGTTATTGGTGATGGTTATGATGTTCATGTTGGCACTGATCATAGCAAGATCAACAACATAAAGAACAAGAAAAATATTGATGATGGTAGAACACACAGTTTATCATGTAAGAAATATGGACCGTACATCTGTCCAAAGTGCAACCAAGTATTTGTTACATCACAAAAGTTTGCTTCACATGCATCAAGTCATTACAGGTTCGAAAGTGAAGAAGAGAGGAAAAAAAGATACATGTCCAGAATTCGAAAGAGACCAAATCTTCAAATTCATAAGCTCAATGATGGAACAACTACTCTTGTTCCTGTTTCTTCTTCGACGGTTCATCCACATGTTACTTCAGTCAATGATAATGCTCATAATCAGATAGCTTCACCTCCTCCAATTGGGGTCAAAATCAAATTTGAGTCTCCAGATAATTAA 735 0.3483 MASKNTSSPLSKSNMKTHAHNLSLSTTATNNYGSHAAGIKKAMKILEIQFGNSHTSSTSSTNNNVVDVINNNNMMMTMNNTSYHSDLITGSSKSHIMSSQTIDSSVIGDGYDVHVGTDHSKINNIKNKKNIDDGRTHSLSCKKYGPYICPKCNQVFVTSQKFASHASSHYRFESEEERKKRYMSRIRKRPNLQIHKLNDGTTTLVPVSSSTVHPHVTSVNDNAHNQIASPPPIGVKIKFESPDN* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5534 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 174 IPR013087 -
Psa6g5534 244 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5534 Psa-Chr6 476774877 476775875 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5534 73 198 C2H2 Transcription Factor Family AT2G15740 40.288 1.15e-19 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g5534 None None None