Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5526 ATGGACCGCTCTGACTTTCACCATCATCATCGTCATTCGGCACATGCTCCTCATCCTCCCCCTGATTACTTTGTTCGGGTTGGGGACTCAGATAACAAAGACGATTTATATTTGAGGAAGAGAACGAGAATGCGTCGTTGGCTATGCTGCACTTGTCAGGTCGAAGAGTCTTATCCATCCAATGAAAACGAACACCTGAAAAGCCCAAGGGGTTATGGAGATGGCAACACAAAAAGTTCGAGAGTGTCGGCTCCTCCCAAACCTGAAGCACAAAAGGCACCACCACCTATCGAAGTTCCAGCATTATCCTTAGATGAGCTGAAGGAAAAAACGGACAACTTTGGATCAAAGGCATTGATTGGTGAAGGCTCGTACGGGAGGGTGTATTATGCAACATTAAACGATGGAAGTGCTGTGGCTGTGAAAAAGCTTGATGTTTCTACTGAACCTGAATCAAATAACGAGTTTCTCACCCAGGTTTCCATGGTCTCAAGATTGAAGAATGAAAATTTTGTTGAATTGCATGGATACTGTGTTGAAGGAAATCTTCGTGTACTTGCATACGAGTTTGCTACTATGGGCTCTCTTCATGATATTTTGCACGGTAGAAAGGGAGTTCAAGGGGCACAACCTGGGCCAACTCTTAACTGGATGCAGCGAGTTCGAATTGCAGTTGATGCAGCAAGGGGATTAGAATATTTACATGAGAAAGTTCAACCATCAATTATACATAGGGATATCAGGTCAAGCAACGTGCTTATCTTTGAAGACTACAGAGCTAAGATAGCTGATTTTAACCTCTCTAATCAGGCCCCTGACATGGCTGCACGCCTTCATTCTACCCGTGTATTAGGAACCTTTGGGTATCATGCTCCAGAATATGCCATGACTGGACAGTTGACTCAAAAAAGTGATGTCTACAGTTTTGGGGTTGTTCTTCTTGAGCTGCTTACAGGTAGAAAACCCGTTGATCATACCATGCCTCGAGGACAGCAGAGTCTTGTCACTTGGGCTACCCCAAGATTAAGTGAAGATAAAGTGAAACAATGCGTTGACCCAAAACTGAAAGGAGAATATCCCCCTAAAGGAGTTGCTAAGCTTGCAGCTGTAGCAGCACTGTGTGTGCAGTATGAAGCTGAGTTCAGGCCTAATATGAGCATTGTTGTTAAAGCACTCCAACCACTTCTGAAGGCTCCTCCCGCACCTGCACCAGAAACTTGA 1221 0.4472 MDRSDFHHHHRHSAHAPHPPPDYFVRVGDSDNKDDLYLRKRTRMRRWLCCTCQVEESYPSNENEHLKSPRGYGDGNTKSSRVSAPPKPEAQKAPPPIEVPALSLDELKEKTDNFGSKALIGEGSYGRVYYATLNDGSAVAVKKLDVSTEPESNNEFLTQVSMVSRLKNENFVELHGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLNWMQRVRIAVDAARGLEYLHEKVQPSIIHRDIRSSNVLIFEDYRAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKAPPAPAPET* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5526 406 Pfam Protein tyrosine and serine/threonine kinase 119 392 IPR001245 GO:0004672|GO:0006468
Psa6g5526 406 MobiDBLite consensus disorder prediction 59 97 - -
Psa6g5526 406 SUPERFAMILY Protein kinase-like (PK-like) 94 392 IPR011009 -
Psa6g5526 406 SMART tyrkin_6 114 392 IPR020635 GO:0004713|GO:0006468
Psa6g5526 406 Gene3D Transferase(Phosphotransferase) domain 1 192 400 - -
Psa6g5526 406 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Psa6g5526 406 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 30 405 - -
Psa6g5526 406 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 ISOFORM X2 30 405 - -
Psa6g5526 406 MobiDBLite consensus disorder prediction 1 24 - -
Psa6g5526 406 Gene3D Phosphorylase Kinase; domain 1 80 190 - -
Psa6g5526 406 ProSitePatterns Tyrosine protein kinases specific active-site signature. 242 254 IPR008266 GO:0004672|GO:0006468
Psa6g5526 406 ProSiteProfiles Protein kinase domain profile. 114 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5526 Psa-Chr6 476391804 476395422 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5526 48 393 Receptor kinase-like Gene Family AT4G02010 46.132 2.44e-92 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Psa6g5526 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5526 K13436 - mnt:21407434 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5526 6 476391804 476395422 Psa6g5526 6 476391804 476395422 ECH