Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5514 ATGGCATCAACATCTTGTGTTATCAAGAGTCCATTAGCTATGAAAGAGACAGGTTCAAGCTGTGGTCAGTATCCTCCTCCTATGGCAACGTATGAAGAGGTTGTGGACAATCCTAAGCTCTTTTTGCATAGCTTGGAGAAGCTCCATGCTACAATGGGCACCAAGTTCATGGTTCCCATTATTGGGGGAAAGGAGTTGGATTTACACCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAAATCATTAAGGATAGAAAATGGAAAGATATAACTTTAGTTTTCAATTTTCCATCAACGGCAACAAATGCTTCTTTTGTGCTGCGGAAGTACTATACTTCATTACTCTACCATTATGAGCAAATCTATTATTTAAAGCTCATAATTGGACTCATGCAGCTCCGAGTCCATCATCCACCCAGTTTTCCTGCTCTGAAGATGCCGTTTTCACATCCTTCATCTGAAGTTCAACCAGCTGTCGTTCAACCGTTAAATGTTAATGCTGCTGGATTGCCTGAAGCAATGGCATCATCATCGGCAGGGTCTCATGTTGTCGGGGTCATTGATGGGAAATTTGAAAGTGGGTATCTAGTTACTGTCACAATCGGTTCGGAGAAACTCAAGGGTGTACTTTATCAAGCTCCACAGAATACTGTGTTGCCAGCACCCGACCACAGTGCTTCGGTTAATAACAACAACGCGGGTGTCCATCGTCGCCGGCGTAGGAAGAAATCAGAAATGAAGAAGAGAGATCCTGCTCACCCAAAACCAAACAGAAGTGGATACAATTTCTTCTTTGCAGAACAACACGCCAGGCTAAAACCTCTTACCAAGGGAAAGACCGAGAATCAGTAG 861 0.4367 MASTSCVIKSPLAMKETGSSCGQYPPPMATYEEVVDNPKLFLHSLEKLHATMGTKFMVPIIGGKELDLHRLFVEVTSRGGIEKIIKDRKWKDITLVFNFPSTATNASFVLRKYYTSLLYHYEQIYYLKLIIGLMQLRVHHPPSFPALKMPFSHPSSEVQPAVVQPLNVNAAGLPEAMASSSAGSHVVGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNTVLPAPDHSASVNNNNAGVHRRRRRKKSEMKKRDPAHPKPNRSGYNFFFAEQHARLKPLTKGKTENQ* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5514 286 SMART ARID_2 32 122 - -
Psa6g5514 286 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 283 - -
Psa6g5514 286 MobiDBLite consensus disorder prediction 223 267 - -
Psa6g5514 286 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Psa6g5514 286 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Psa6g5514 286 Gene3D - 29 129 IPR036431 GO:0003677
Psa6g5514 286 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 283 - -
Psa6g5514 286 SUPERFAMILY ARID-like 33 126 IPR036431 GO:0003677
Psa6g5514 286 SMART bright_3 36 127 IPR001606 GO:0003677
Psa6g5514 286 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Psa6g5514 286 MobiDBLite consensus disorder prediction 237 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5514 Psa-Chr6 475755924 475757845 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5514 1 285 ARID Transcription Factor Family AT1G04880 55.667 1.44e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Psa6g5514 ARID 3.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5514 - - gmx:100807028 384.415