Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5494 ATGGTATCGGCTACAATTAGGCGAATCGTGTCACCCTGTTGGAGGCCATCTAGTGAGGGCGATTCTAGTAGGTATGGCGATGCAAGTGGACGTTCCGAGGGTTTGTTGTGGTATAAGGATTCTGGAAGACATGCAAATGGTGAATTCTCAATGGCTGTTGTTCAAGCAAACAATTTGTTGGAGGATCATAGCCAGGTTGAATCAGGACCCATGAGCTTAACTGAAGGAACTCCTCATGGTACTTTTGTTGGTGTTTATGATGGCCATGGAGGCCCAGAGACTGCTCGGTTTGTCAATGATCGCCTATTTAAACATATGAAGAAGTTCACTGCAGAAAACCAGGGAATGTCGGCTGATGTTATCACGAAAGCATTTATGGCAACAGAAGAAGAATTTCTTGCTCTGGTGAAGAAGCAGTGGCAACACAAGCCACAGATAGCGTCAGTTGGAGCTTGCTGTTTGGTAGGTGTAATATATAACGGAGAGCTCTATACTGCAAATGCAGGAGATTCTCGAGCAGTGTTAGGTAGAATGGATGAGGCTACAAAAGAGGTTAAAGCGGTTCAACTATCTTATGAGCACAATGCTAGCCTGGAATCTGTCAGAGAAGAGCTACGCTCGTTGCATCCCAATGATCCACAGATCGTAATGATGAAGCACACGGTCTGGCGCGTGAAGGGTCTCATTCAGATTTCAAGATCCCTTGGCGACGCCTATCTAAAGAAGAAAGAGTTTAACCAAGCACCACTGTTGTCGAAATTCCGGCTCTCAGAACCCTTTGAAACGCCAATACTTAAAGCTGAACCAACAATACAAGTACAGAAACTAGAACCTAGTGATCAATTTATTATATTTGCATCAGATGGATTATGGGAGCATATGAGCAATCAAGAAGCAGTTGACATTGTCCAAAGCTGTCCACGCAATGGAGTAGCAAAGAAACTTATAAAATCAGCGCTTTGTGAAGCTGCAAAGAAAAGAGAAATGAGATACTCAGACTTGAAAAAGATTGACCGTGGTGTACGGAGACATTTCCATGACGACATCACGGTCATAGTTGTGTATCTTGATTCGCATAATTCGCGAGCTCCCACCGTTTCAATTAAAGGAGGTGGTGATTTTGGTACCGGTATTGTAAATGGCTAG 1146 0.438 MVSATIRRIVSPCWRPSSEGDSSRYGDASGRSEGLLWYKDSGRHANGEFSMAVVQANNLLEDHSQVESGPMSLTEGTPHGTFVGVYDGHGGPETARFVNDRLFKHMKKFTAENQGMSADVITKAFMATEEEFLALVKKQWQHKPQIASVGACCLVGVIYNGELYTANAGDSRAVLGRMDEATKEVKAVQLSYEHNASLESVREELRSLHPNDPQIVMMKHTVWRVKGLIQISRSLGDAYLKKKEFNQAPLLSKFRLSEPFETPILKAEPTIQVQKLEPSDQFIIFASDGLWEHMSNQEAVDIVQSCPRNGVAKKLIKSALCEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVYLDSHNSRAPTVSIKGGGDFGTGIVNG* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5494 381 ProSiteProfiles PPM-type phosphatase domain profile. 48 356 IPR001932 -
Psa6g5494 381 PANTHER ALPHABET, ISOFORM E-RELATED 8 373 - -
Psa6g5494 381 SUPERFAMILY PP2C-like 59 358 IPR036457 -
Psa6g5494 381 CDD PP2Cc 49 356 IPR001932 -
Psa6g5494 381 Gene3D - 37 363 IPR036457 -
Psa6g5494 381 Pfam Protein phosphatase 2C 70 326 IPR001932 -
Psa6g5494 381 ProSitePatterns PPM-type phosphatase domain signature. 82 90 IPR000222 GO:0043169
Psa6g5494 381 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 8 373 - -
Psa6g5494 381 SMART PP2C_4 40 354 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5494 Psa-Chr6 474956974 474960752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5494 3 375 PP2C-type Phosphatase Gene Family AT3G12620 73.879 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5494 K01102 - gmx:100807559 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5494 6 474956974 474960752 Psa6g5494 6 474956974 474960752 ECH