Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5488 ATGCCTCAGCTTCGTAGTGGAGTGCGACGTGCTCGTGCAGCGCCGGTAACCAACAAAGAATCGGAACCACCGAAGAAAAACAAGCCGGGGAGAGGTAGACCCAGAACTAGATTGGCCGCCAAGAAATCTGAGCCGTTGACACAGTTATTGATCCCTGAAACTTTGAAGAACGTGGTTGAAGAAGGTGTGGGTGTGATGGGTGATGAAAGAGTTGGTGTCAGTGCTAATAAGGATAAGGGTGTTGCTGCTGTTCCAGAAGAAGATGCCAACTCTCCACCTCTTCCAGAAAGGGTTCAAGTAGGAGGATCGCCTCTCTACAAGGTAGAAAGGAAACTTGGTAAAGGTGGATTTGGCCAGGTATTTGTTGGCCGCCGCGAGCGTGCTAATGCTCCTGGAGCTTTGGAGGTGGCTCTGAAATTTGAACATAGAAACAGTAAAGGTTGCAACTATGGCCCTCCTTATGAGTGGCAAGTATACAACACCCTTGGTGGTAGTCATGGAATACCTAAAGTACACTATAAAGGAAGACAAGGAGAATATTATGTGATGGTTATGGACATTCTTGGTCCAAGTTTGTGGGATGTATGGAATACCTCAGGCCAGTCGATGTCTCCTGAAATGGTTTCATGTATAGCTGTTGAGTCATTATCAATACTTGAGAAGTTGCATGCAAAAGGTTATGTACACGGAGATGTAAAACCAGAGAACTTTTTACTAGGTCAGCCCAACACAGCACAGGAGAAGAAATTGTTTCTTGTTGATCTTGGTTTAGCAACAAAGTGGAAAGACTCGTCGAGTGGAAAGCATACTGAATATGATCAACGCCCCGACATGTTTAGAGGGACTGTTCGATACGCAAGTGTTCATGCTCATTTGGGAAGAACTGCCAGTAGAAGGGATGATCTTGAATCACTTGCATACACACTAATCTTCCTTCATAGGGGCCGATTGCCATGGCAAGGTTTCCAGGGTGATGGTAAATCCTTCCTCGTTTGCAAAAAGAAAATGGGAACATCTGCCGAGATGCTGTGCTGCTTCTGCCCTGCTCCTTTTAAACAATTTCTCGAGACTGTGGTGAACATGAAGTTTGATGAAGAACCCAACTATTCCAAGCTAATAACCTTGTTTGATGGTATGCTCGGACCTAATCCTGCATTGCGACCAATTAATACTGAAGGCGCTATAAAGGTTGGGCAAAAGCGGGGTAGATTAAATGCTGATGCAGATGATGAACAGCCCAAAAAAAAGGTTCGGTCAGGGATTCCTGCTTCCCAATGGATTTCAGTTTACAATGCTAGACAACCAATGAAACAAAGGTATCATTACAATGTGGCTGATGGAAGATTAGCACAGCATATTGAGAGAGGGATTGCAGATGACCTTCTTATCAGTTGTGTATCATGTTGTTCCAATCTATGGGCACTTATCATGGATGCCGGAACTAATTATACCGCTCAAGTTTACAAGTTATCACCATTGTTTTTACACAAGGAATGGATCTTAGAACAATGGGATAAAAACTTCTACATTACTTCTATTGCAGGGGCCAATAATGGCAGCTCTGTTGTCGTGATGTCTAAAGGTACGAGGTATACTCAACAATCGTACAAAGTAAGCGAATCTTTCCCCTACAAATGGATAAACAAGAAGTGGAAAGAAGGTTTTCACGTCACCTCAATGGGTACTGCTGGAAACCGCTGGGGTATTGTTATGTCTCGCAATGCTGGATTCAGTGATCAGGTGGTGGAACTGGATTTCCTCTATCCGAGTGAAGGAATCCATAAACGCTGGGATAATGGTTATAGGATTACAGCTACTGCAGCTACATTGGATCAATCTGCCCTTATATTAAGTATCCCGAGGAACAGGCCCGGTGATGAAACTCAGGAAACTCTGCGTACATCTCAATTTCCCAGTGCTCATGTAAAGGAAAAATGGTCAAAAAACCTTTATCTTGCCCATTTGTGCTATGGGCGCACAGTATGCTGA 1989 0.4399 MPQLRSGVRRARAAPVTNKESEPPKKNKPGRGRPRTRLAAKKSEPLTQLLIPETLKNVVEEGVGVMGDERVGVSANKDKGVAAVPEEDANSPPLPERVQVGGSPLYKVERKLGKGGFGQVFVGRRERANAPGALEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDILGPSLWDVWNTSGQSMSPEMVSCIAVESLSILEKLHAKGYVHGDVKPENFLLGQPNTAQEKKLFLVDLGLATKWKDSSSGKHTEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGFQGDGKSFLVCKKKMGTSAEMLCCFCPAPFKQFLETVVNMKFDEEPNYSKLITLFDGMLGPNPALRPINTEGAIKVGQKRGRLNADADDEQPKKKVRSGIPASQWISVYNARQPMKQRYHYNVADGRLAQHIERGIADDLLISCVSCCSNLWALIMDAGTNYTAQVYKLSPLFLHKEWILEQWDKNFYITSIAGANNGSSVVVMSKGTRYTQQSYKVSESFPYKWINKKWKEGFHVTSMGTAGNRWGIVMSRNAGFSDQVVELDFLYPSEGIHKRWDNGYRITATAATLDQSALILSIPRNRPGDETQETLRTSQFPSAHVKEKWSKNLYLAHLCYGRTVC* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5488 662 ProSiteProfiles Protein kinase domain profile. 106 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5488 662 SUPERFAMILY Protein kinase-like (PK-like) 106 384 IPR011009 -
Psa6g5488 662 MobiDBLite consensus disorder prediction 15 29 - -
Psa6g5488 662 Gene3D Transferase(Phosphotransferase) domain 1 76 419 - -
Psa6g5488 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Psa6g5488 662 MobiDBLite consensus disorder prediction 1 45 - -
Psa6g5488 662 SMART serkin_6 106 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5488 662 Pfam Protein kinase domain 106 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5488 662 PANTHER CASEIN KINASE-RELATED 57 636 - -
Psa6g5488 662 CDD STKc_CK1 106 376 - -
Psa6g5488 662 PANTHER CASEIN KINASE I-LIKE PROTEIN 57 636 - -
Psa6g5488 662 ProSitePatterns Protein kinases ATP-binding region signature. 112 139 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5488 Psa-Chr6 474815088 474820373 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5488 219 376 MAP Kinase Kinase Kinase AT5G50180 25.000 3.12e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Psa6g5488 Pkinase 2.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5488 - - gmx:100807373 1107.82