Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5482 ATGGGAAGGCCTCCTTGTTGTGATAAAACCAATGTCAAAAGGGGTTTATGGACTCCTGAGGAAGATGCTAAAATTCTTGCTTATGTTGCTAATCATGGAATTGGAAATTGGACATTGGTTCCGAAGATCGCCGGGTTGAATCGGTGCGGTAAGAGTTGCAGATTAAGATGGACTAATTATCTAAGACCTGATTTGAAGCATGATAGTTTTACACCACAAGAAGAAGAACTCATTCTTACTCTTCATGCAGCTATAGGAAGCAGATGGTCATTAATTGCAAAAAGACTACCTGGAAGAACAGACAATGATGTTAAGAATTATTGGAACACAAAATTAAGAAAGAAGCTTATGAAAATGGGAATTGATCCAGTAACTCATAAGCCAGTTTCACAAGTTCTTTCTGATTTAGGAAGCATTAGTAGCCTCACAACAATAACCACTCAAAACCAAATGAATTTTGTCAATAACAATACAATTTTGGAGCATCCCAAAGAGGAACAAGTTCAATATCACCACCAATTCACAAACCAAGAGAGTTTCCAGCAACAATATGTTCTAAATGAAGTTGCATCTTCGACTTCGTCATCATGTTCCTCTAGTTTAACAAGACTAAGTTCACCGATTTCGTACTCGTGCAAAACTTCACAAGCTCAGATTAATCCTAACTTTGATTGGAGCGAGTTTCTTCACAATGATGAGCCGTTTATGTGGTCGGAGATTCAACAGATTCAACAATGTGACATACAAAGGGTGATGTCGTCGTTGAACCTCTCGGGTTTAATGCAAAATGAAGGTGAAATTTCTAATAATAATAGTAATAATTATAATGGTAATGGAAGTGATAAACAAGGTGGTTCAAGTGAAGGTTTTGATGCTGTTGCTTGTGTTGCAAGTAAGGAATATGAAATGAATAAGCAATGTGAAGGAAATTCATTTTCAGGGAATGAGTTTGTGGATGGTATTTTGGATAAGGATAGTGAGATAAGGGCAACTTTTCCTGAGTTTTTAGATGCATCTTTTGATTATTGA 1029 0.3664 MGRPPCCDKTNVKRGLWTPEEDAKILAYVANHGIGNWTLVPKIAGLNRCGKSCRLRWTNYLRPDLKHDSFTPQEEELILTLHAAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISSLTTITTQNQMNFVNNNTILEHPKEEQVQYHHQFTNQESFQQQYVLNEVASSTSSSCSSSLTRLSSPISYSCKTSQAQINPNFDWSEFLHNDEPFMWSEIQQIQQCDIQRVMSSLNLSGLMQNEGEISNNNSNNYNGNGSDKQGGSSEGFDAVACVASKEYEMNKQCEGNSFSGNEFVDGILDKDSEIRATFPEFLDASFDY* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5482 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa6g5482 342 CDD SANT 69 112 IPR001005 -
Psa6g5482 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa6g5482 342 PANTHER F14D16.11-RELATED 1 342 - -
Psa6g5482 342 PANTHER F14D16.11-RELATED 1 342 - -
Psa6g5482 342 CDD SANT 17 61 IPR001005 -
Psa6g5482 342 SMART sant 13 63 IPR001005 -
Psa6g5482 342 SMART sant 66 114 IPR001005 -
Psa6g5482 342 Gene3D - 68 131 - -
Psa6g5482 342 Gene3D - 7 67 - -
Psa6g5482 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Psa6g5482 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa6g5482 342 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Psa6g5482 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Psa6g5482 342 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5482 Psa-Chr6 474311860 474314553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5482 1 342 MYB Transcription Factor Family AT3G28470 44.875 1.69e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa6g5482 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5482 K09422 - gmx:100815077 413.69