Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5457 ATGTTTCGGGAGACAATCGCCGTGTCCGCCGCCACGACGCGGTGGGCGAGTCATCAAACTCAGTGGACTCGCGACCACGACAAGCTCTTCGAGCGAGCTCTGTTGATCGTGCCGGAGGATTTACCGAACCGGTGGGAGAAGATCGCCGAGCAAGTTCCCGGTAAGTCGGCGGCGGAAGTTAGGGATCACTATGAAGCTTTGGTTCATGATGTGTTGGAAATTGATTCCGGTAGGGTTGAGGTTCCGAGTTACTCTGATGAATCAGCGGTGGTCAGTGGTGGTGGATTGAATGAATGGGATTCTTCTAATCAAATTTCGTTTGGTTCTAAGGTTAAACATGGCGGTGATAACGAGAGAAAGAAAGGAACACCGTGGACTGAAGAAGAACATAGGTTATTTCTTATTGGGCTTAGCAAATTTGGGAAAGGAGATTGGAGAAGCATATCAAGAAACGTTGTTGTGACAAGAACACCGACTCAGGTAGCTAGCCATGCTCAGAAGTACTTTCTTCGCCAGAACTCGGTGAAAAAAGAGAGAAAAAGATCAAGTATTCATGACATTACATCCGTTGACAGTAACTCTGCTCCCGCGCCTATCGATCAGAATTGGGTTCCTCCTCCTGGTGGCGCTTCAATTCAACAGTCTCAAGAAATGCAGCATTATCCATCAAACAATTTTCAAGATCAAATGGGTTCATTTGGGTATTCAACTTATGGCTTTCAGATCTAA 729 0.465 MFRETIAVSAATTRWASHQTQWTRDHDKLFERALLIVPEDLPNRWEKIAEQVPGKSAAEVRDHYEALVHDVLEIDSGRVEVPSYSDESAVVSGGGLNEWDSSNQISFGSKVKHGGDNERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITSVDSNSAPAPIDQNWVPPPGGASIQQSQEMQHYPSNNFQDQMGSFGYSTYGFQI* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5457 242 ProSiteProfiles Myb-like domain profile. 117 169 IPR001005 -
Psa6g5457 242 SUPERFAMILY Homeodomain-like 119 174 IPR009057 -
Psa6g5457 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 173 IPR017930 -
Psa6g5457 242 CDD SANT 124 169 IPR001005 -
Psa6g5457 242 Pfam Myb-like DNA-binding domain 21 64 IPR001005 -
Psa6g5457 242 Pfam Myb-like DNA-binding domain 124 169 IPR001005 -
Psa6g5457 242 ProSiteProfiles Myb-like domain profile. 22 68 IPR001005 -
Psa6g5457 242 Gene3D - 123 175 - -
Psa6g5457 242 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 17 241 IPR043363 -
Psa6g5457 242 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
Psa6g5457 242 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 17 241 - -
Psa6g5457 242 SMART sant 18 70 IPR001005 -
Psa6g5457 242 SMART sant 121 171 IPR001005 -
Psa6g5457 242 CDD SANT 22 68 IPR001005 -
Psa6g5457 242 ProSiteProfiles SANT domain profile. 120 173 IPR017884 -
Psa6g5457 242 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 120 172 IPR006447 GO:0003677
Psa6g5457 242 Gene3D - 15 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5457 Psa-Chr6 472912742 472915550 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa6g5457 Myb_DNA-binding 4.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5457 - - gmx:547481 382.489