Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5450 ATGAAAAGAAATGGGAGTAAAAGAGATGAAAAGGGGAACAAAGTAAATAATATAATGGTCTCAGACACCGACTGCCTCGAACATGCTGCCGCGTCCACTACCGCCGTCGATAAAAGTCACCCCGCACCGCCGGCACCTTCAAACATTGTGATTTCTTACAGAAATCACGATTCTCTCTCCAGCGGTGGCGGCATCAGCATTTTATCTGGAAGTCGAAATGGAAAGATCAGCTATGGATATTCCAGTTTTAAGGGTAAAAGAGCTTCAATGGAGGATTTCTTTGAGGCCAAAATATCAGAGGTTGATGGTCAAATGGTTGCCTTTTTTGGTGTTTTTGATGGCCACGGAGGTTCACAGACTGCAGAATACCTGAGAAATAATTTATTCAAAAACTTGAGTAGCCATCCCGACTTTATCAAAGACACTAAGACAGCTATTGTTGAAGCATTCAAACAAACAGACGTTGATTACCTCAATGAGGAAAAGGGACATCAAAGGGATGCTGGATCCACTGCATCAACAGCTGTATTGTTAGGCGACCGAATTCTTGTTGCAAATGTTGGTGATTCCCGAGTAGTTGCTTCTAGAGCTGGTTTAGCTGTTCCTTTGTCTATTGATCACAAACCTGATAGATCTGATGAGCGTCAAAGGATTGAACAAGCTGGGGGATTCGTATTATGGGCAGGAACATGGAGGGTCGGTGGCGTCCTTGCCGTTTCCCGTGCATTTGGAGACAAGTTTCTTAGACCATATGTTGTTGCCGACCCAGAAATTCAGGAGGAAGACATCGAAGGCGTGGATTTTTTAATAGTAGCTAGTGATGGCCTTTGGAATGTTATATCAAACAATGAGGCGGTGTCTTTAGTACAAAATATCACTGATGCAGAAGCTGCATCTAAAGCACTAATTAAAGAAGCTTATAGTCGAGGAAGCTCCGACAACATCACATGCGTCGTTGTTCGATTTGATCCATCCTGA 978 0.4335 MKRNGSKRDEKGNKVNNIMVSDTDCLEHAAASTTAVDKSHPAPPAPSNIVISYRNHDSLSSGGGISILSGSRNGKISYGYSSFKGKRASMEDFFEAKISEVDGQMVAFFGVFDGHGGSQTAEYLRNNLFKNLSSHPDFIKDTKTAIVEAFKQTDVDYLNEEKGHQRDAGSTASTAVLLGDRILVANVGDSRVVASRAGLAVPLSIDHKPDRSDERQRIEQAGGFVLWAGTWRVGGVLAVSRAFGDKFLRPYVVADPEIQEEDIEGVDFLIVASDGLWNVISNNEAVSLVQNITDAEAASKALIKEAYSRGSSDNITCVVVRFDPS* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5450 325 ProSitePatterns PPM-type phosphatase domain signature. 108 116 IPR000222 GO:0043169
Psa6g5450 325 PANTHER ALPHABET, ISOFORM E-RELATED 43 324 - -
Psa6g5450 325 SMART PP2C_4 67 320 IPR001932 -
Psa6g5450 325 Gene3D - 69 325 IPR036457 -
Psa6g5450 325 ProSiteProfiles PPM-type phosphatase domain profile. 77 322 IPR001932 -
Psa6g5450 325 SUPERFAMILY PP2C-like 70 323 IPR036457 -
Psa6g5450 325 CDD PP2Cc 76 322 IPR001932 -
Psa6g5450 325 PANTHER PROTEIN PHOSPHATASE 2C 11-RELATED 43 324 - -
Psa6g5450 325 Pfam Protein phosphatase 2C 78 315 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5450 Psa-Chr6 472716000 472720437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5450 49 325 PP2C-type Phosphatase Gene Family AT1G43900 71.119 4.83e-149 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5450 K17506 - gmx:100776867 500.745