Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5444 ATGGCGTCGACGCCGATTCAACCGTACGGAGATTTGGACTCCACTCTGAGGGCCATGGCAGGCCGCGCTGAGGGCTTCGGCCGCCTCGCCATTGGTGGCCTCCACGGTCCTCTCTATTTGGTTACCTCCCTTTCAGATGATGGTCCTGGCTCGCTACGCGAAGGATGTCGTAGAAAGGAGCCGCTGTGGATTGTTTTTGAAATTTCAGGTACAATTAATCTTTCGTCATACCTGAGTGTGTCCTCTCATAAGACAATAGATGGAAGAGGCCAGAGGATTAAATTGACTGGGAAAGGCTTAAGACTGAAAGAATGTGAGAATATAATTATATGCAATCTTGAGTTTGAGGGGGGACGGGGTCATGATGTAGATGGGATTCAGATAAAACCAAATTCTAGGAATATTTGGATAGACCGTTGTAGTCTTCGAGATTACGATGACGGACTTATAGACATCACAAGACAAAGCACGGATATCACTATATCTAGATGCTACTTTGCACAGCATGACAAGACCATGCTAATTGGAGCTAACCCGTCACATGTTGGCGATAGATGCATTCGGGTGACGATTCATCATTGTTTCTTTGATGGAACACGGCAGAGACACCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACATCAGAAACTGGGAAGTCTATGCAATTTGTGCTAGTGTCGAGGCCCAGATATACTCGCAATGCAACATATATGAAGCAGGAACTAAGAAAAAAGCTTTTGAATTTTATACCGAAAAGGCGGAAGACAAAGAAGATCAGGAGTCCGGCTTCATAATATCCGAAGGAGACATGCTTCTGAATGGTGTCCAGCCATGCATGCCACCGGAATCTAAAGAAGAAACCATGTTTCATCCTAGTGAATATTACCCAACTTGGACAATGGAAGCAGCTACAGATTCTCTCAGGGAGGTTATCCAGTTATGTACAGGTTGGCAGTCCATTTGTAGGCCAGTAGACAATATGTTATGA 999 0.4474 MASTPIQPYGDLDSTLRAMAGRAEGFGRLAIGGLHGPLYLVTSLSDDGPGSLREGCRRKEPLWIVFEISGTINLSSYLSVSSHKTIDGRGQRIKLTGKGLRLKECENIIICNLEFEGGRGHDVDGIQIKPNSRNIWIDRCSLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGANPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYIRNWEVYAICASVEAQIYSQCNIYEAGTKKKAFEFYTEKAEDKEDQESGFIISEGDMLLNGVQPCMPPESKEETMFHPSEYYPTWTMEAATDSLREVIQLCTGWQSICRPVDNML* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5444 332 PANTHER PECTATE LYASE 6 328 - -
Psa6g5444 332 PRINTS Pollen allergen Amb family signature 22 39 IPR018082 -
Psa6g5444 332 PRINTS Pollen allergen Amb family signature 202 221 IPR018082 -
Psa6g5444 332 PRINTS Pollen allergen Amb family signature 224 243 IPR018082 -
Psa6g5444 332 SMART amb_all 34 247 IPR002022 -
Psa6g5444 332 Pfam Pectate lyase 77 240 IPR002022 -
Psa6g5444 332 PANTHER PECTATE LYASE 18-RELATED 6 328 IPR045032 GO:0030570
Psa6g5444 332 SUPERFAMILY Pectin lyase-like 20 323 IPR011050 -
Psa6g5444 332 Gene3D - 9 319 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5444 Psa-Chr6 472384129 472387529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5444 46 330 Polysaccharide Lyase AT3G55140 78.246 2.07e-177 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5444 K01728 - gmx:100802068 608.986