Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5443 ATGGCCAGAATCAAGGTTCACGAATTGAGGCAGAAAGCCAAAGCTGATCTCTTGAGTCAGCTCAAGGACCTCAAGGCCGAACTCGCCTTGCTCCGTGTTGCTAAGGTCACCGGTGGTGCACCCAACAAGCTCTCCAAGATCAAGGTGGTGAGGCTGTCGATTGCTCAGGTTTTGACAGTGATTTCTCAGAAGCAGAAGGCTGCATTGAGGGAAGTTTACAAGAACAAGAAGTATTTGCCACTTGATCTCCGCCCTAAGAAGACCAGGGCTATTCGCCGAAGGCTCACCAAGCACCAGGCTTCTCTTAAGACCGAGAGGGAGAAGAAGAAAGAGACATACTTCCCATTGAGGAAGTATGCCATCAAAGCATAA 372 0.4946 MARIKVHELRQKAKADLLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREVYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKETYFPLRKYAIKA* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5443 123 TIGRFAM L29: ribosomal protein uL29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Psa6g5443 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Psa6g5443 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Psa6g5443 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Psa6g5443 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Psa6g5443 123 Gene3D - 78 123 - -
Psa6g5443 123 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 1 122 - -
Psa6g5443 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 122 IPR045059 GO:0000463|GO:0022625
Psa6g5443 123 Coils Coil 14 34 - -
Psa6g5443 123 CDD Ribosomal_L29_HIP 8 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5443 Psa-Chr6 472381214 472383384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5443 1 122 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 90.164 9.44e-74 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5443 K02918 - cpap:110824116 222.631