Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5422 ATGATGGTATCGAGGGGGCTTTTCGGGTGGTCTCCACCTCATGTGCAACCTTTAACGCCGGTGTCTGAGGTTTCTGAGCCGCCGGAGTCGCCGTCTCCGTATATGGACATCGGAGGAGAGACCTCCGCGTCGCAGCAAATGGAGGCCGAGGAGGAGATGGAAGAAATGGAGGATATTGAGCCTCCGCCTGCTGCCGTTCCTTTCTCTGGCCTCTTTGCTTGTGCTGATAAGTTCGACTGGTTTCTCATGGTGGTTGGCTCCATCGCCGCGGCGGCTCACGGCACTGCGCTTGTTGTTTACTTGCATTACTTTGCTAAAGTTATTCAGGTTCCTCAGCAGGAGGATCAGTTTCATAGGTTCAAGGAGCTTGCTTTGACCATTGTTTATATTGCTGGTGGTGTTTTTGTTGCTGGTTGGATTGAGGTTTCATGCTGGATTCTTACCGGAGAACGACAGACAGCAGTCATCAGATCAAAATATGTTAGAGTATTACTAAACCAAGATATGAGTTTCTTTGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTCCTGCTCATTCAGTCTGCTCTCAGTGAAAAAGTCGGGAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTGATAACATTAGCTACAGGTCCATTTATTGTTGCTGCAGGAGGAATATCAAATATATTCCTTCACAGGCTTGCAGAGAACATCCAAGATGCATATGCAGAAGCAGCCAGCATTGCTGAACAGGCAGTCTCCTATATCCGGACCTTGTCTGCATTTACAAATGAAACATTGGCTAAATATTCATATGCAACGTCACTGCAAGCAACTCTTAGATATGGTATATTAATAAGTCTTGTCCAAGGGCTTGGACTTGGATTTACATATGGGCTTGCAATCTGTTCTTGTGCATTACAACTCTGGGTTGGTAGGTTCTTGGTTATGCATGGAAAAGCTCATGGTGGGGAAATTATAACAGCTCTGTTTGCTGTGATTCTAAGTGGCTTGGGATTAAATCAAGCGGCGACAAATTTCTACTCATTTGATCAAGGGCGAATAGCTGCCTATAGACTATACGAGATGATAAGCCGGTCATCCTCATCTTTTGATCATGATGGAAGTGCTCCTGTGGCTGTGCAAGGAAATATAGAGTTTCGGAATGTTTACTTCAGTTATCTTTCACGCCCTGAAATCCCTATCTTAAGTGGGTTTTATCTCACTGTTCCTGCTAAGAAAACTGTGGCACTTGTTGGCAGAAATGGATCTGGTAAAAGTAGTATTATTCCACTCATGGAGCGGTTCTATGATCCAACATTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAAACTGGAATGGTTGAGGAGTCAAATAGGACTGGTCACTCAGGAACCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCATATGGGAGGGATACCACCGCCGATCAAATTGAAGAGGCTGCTAAAATAGCTCACGCACATACTTTTATCAGTTCATTAGATAAAGGTTATGATACACAGATTGGCAGGGCTGGTTTAACTTTGACAGAAGAACAGAAAATAAAGCTTTCCATTGCAAGAGCTGTGCTCCTAAATCCATCCATTCTCTTGCTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGTCTGTTCAGGAGGCTCTGGATCTCCTTATGCTGGGGCGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTCATAAAGAACGCTGATTATATAGCAGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCACGATGAATTATTGACCCTGGGTGGCTTATATGCAGAGCTTCTTCGATGTGAAGAGGCCACAAAACTTCCAAAGAGAATGCCTGCTCGCAACTACAAGAAGACTGCAGCTTTCCAAATTGAGAAAGATTCTTCAGAGAGTCATAGCTGCAAAGAACCATCATCTCCCAGAATGATGAAGTCACCCTCTCTTCAAAGAATTTCTACTGTATTTCGGCCTCCAGATGGCTTCTTTAACTTACAAGAATCACCACATGTGCAGAGCCCACCACCTGAGAAGATGATGGAAAATGGTCAGTCTCTGGATTCAACAGAGAAAGAGCCATCAATTAAAAGGCAGGATAGCTTTGAAATGAGACTTCCCGAGTTACCCAAGATTGATGTTCACTCAGTGCATCGACAAACATCAAATGGTTCTGACCCTGAATCCCCTATTTCACCTCTTTTAACATCTGATCCTAAAAATGAACGCTCCCATTCACAAACATTTAGCAGACCAGATAGTTATTCTGATGAATTTTCAGTGAAAATGAACGAAACAAAGGATTCACGGCATCGACATCAACCCTCATTTTGGAGACTGGCAGAACTTAGTTTTGCTGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGCGCTGCAATCTTTGGCGCATTCAATCCCCTTCTTGCTTATGTTATTGGCCTAGTGGTGACAACCTACTATAGAATTGATGGAACTCATCACTTACGGGGCGAGATTGACAAGTGGTGCCTGATCATTGCCTGCATGGTTGTTGCCAACTTTTTACAGCATTTCTACTTTGGTATAATGGGGGAGAAAATGACCGAAAGAGTCAGGAGAATGATGTTCTCAGCCATGCTACGTAATGAAATTGGATGGTACGATGAAGAGGAAAACAGTGCCGACAATTTATCCATGCGTTTGGCCAATGATGCTACTTTTGTGAGAGCTGCTTTCAGTAACCGGCTTTCCATATTAAAGAGGAAAACAGACATTGCCGCAGTTATTGTTGCTTTTCTAATTGGTGTTTCGCTGCACTGGAGAATAGCTCTCGTGGCTTTGGCAACACTTCCGATTCTCTGTGTTTCTGCTATTGCCCAGAAATTATGGCTTGCTGGTTTTTCAAGGGGCATACAGGAAATGCACCGAAAAGCATCTTTGGTTCTTGAAGATGCAGTTAGAAATATTTACACTGTTGTTGCATTTTGTGCTGGTAATAAGGTAATGGAGCTCTACAGGCTGCAGTTAAATAAAATATTTAAGCAGAGCTTTCTCCATGGATTGGCTATTGGTTTTGCATTTGGCTTTTCACAGTTTCTACTTTTTGCTTGTAACGCGCTTCTACTTTGGTACACTGCAATATGTATAAAAAAGAGTTATGTGGATGCACCTACTGCCCTCAAGGAGTACATTGTTTTCTCATTTGCTACATTTGCACTCGTGGAGCCTTTTGGACTGGCTCCTTACATACTCAAGCGACGTAAATCTCTCATTTCAGTGTTTGAAATTATAGACCGGGTACCTAAAATCGACCCTGATGAAAGCTCAGCTTTGAAGCCACCCAATGTATATGGAAGCATTGAGTTGAAAAATGTTGATTTTTGTTATCCTACACGGCCAGAAGTACTGGTATTAAGCAATTTCAGTCTCAAAGTCAGTGGGGGGCAAACAATTGCTGTTGTGGGAGTTTCAGGGTCAGGAAAGAGCACTATAATATCTTTGATGGAGAGATATTATGATCCAGTTGCTGGCCAAGTTTTATTGGATGGGAGGGATTTAAAATTATATAACCTGAAATGGCTTAGGAGCCACCTTGGTTTGGTACAGCAGGAACCAGTTATCTTCTCAACAACCATACGGGAAAACATCATATACGCCCGACATAATGCCAGTGAAGCTGAAATAAAAGAGGCCGCAAGAATAGCAAATGCTCATCATTTCATCAGTAGTCTACCTCATGGTTATGACACTCATGTTGGAATGAGAGGTGTTGACTTAACTCCAGGACAGAAACAGAGAATTGCAATTGCTAGGGTAGTGTTGAAAAATGCGCCTATCTTGTTGTTGGATGAAGCTAGCTCATCAATTGAATCAGAGTCTAGCCGAGTAGTGCAAGAGGCTTTAGACACTCTAATAATGGGAAACAAGACCACTATTTTAATAGCTCACAGGGCTGCCATGATGAGGCATGTGGACAATATAGTTGTACTGAATGGAGGACGGATAGTGGAAGAGGGGACTCATGATTCATTGATGGCTAAGAATGGTCTGTATGTCCGATTAATGCAACCTCATTTTGGTAAGGGTTTGCGTCAGCATCGGCTTCTTTAG 4185 0.4253 MMVSRGLFGWSPPHVQPLTPVSEVSEPPESPSPYMDIGGETSASQQMEAEEEMEEMEDIEPPPAAVPFSGLFACADKFDWFLMVVGSIAAAAHGTALVVYLHYFAKVIQVPQQEDQFHRFKELALTIVYIAGGVFVAGWIEVSCWILTGERQTAVIRSKYVRVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLSAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVMHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSSFDHDGSAPVAVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDTTADQIEEAAKIAHAHTFISSLDKGYDTQIGRAGLTLTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVEMGTHDELLTLGGLYAELLRCEEATKLPKRMPARNYKKTAAFQIEKDSSESHSCKEPSSPRMMKSPSLQRISTVFRPPDGFFNLQESPHVQSPPPEKMMENGQSLDSTEKEPSIKRQDSFEMRLPELPKIDVHSVHRQTSNGSDPESPISPLLTSDPKNERSHSQTFSRPDSYSDEFSVKMNETKDSRHRHQPSFWRLAELSFAEWLYAVLGSIGAAIFGAFNPLLAYVIGLVVTTYYRIDGTHHLRGEIDKWCLIIACMVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEIGWYDEEENSADNLSMRLANDATFVRAAFSNRLSILKRKTDIAAVIVAFLIGVSLHWRIALVALATLPILCVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLNKIFKQSFLHGLAIGFAFGFSQFLLFACNALLLWYTAICIKKSYVDAPTALKEYIVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDESSALKPPNVYGSIELKNVDFCYPTRPEVLVLSNFSLKVSGGQTIAVVGVSGSGKSTIISLMERYYDPVAGQVLLDGRDLKLYNLKWLRSHLGLVQQEPVIFSTTIRENIIYARHNASEAEIKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLMAKNGLYVRLMQPHFGKGLRQHRLL* 1395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5422 1394 Coils Coil 246 266 - -
Psa6g5422 1394 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 400 635 IPR003439 GO:0005524
Psa6g5422 1394 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 824 1114 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g5422 1394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 634 IPR027417 -
Psa6g5422 1394 SMART AAA_5 427 606 IPR003593 -
Psa6g5422 1394 SMART AAA_5 1172 1359 IPR003593 -
Psa6g5422 1394 MobiDBLite consensus disorder prediction 703 729 - -
Psa6g5422 1394 PANTHER ABC TRANSPORTER B FAMILY 19 1390 - -
Psa6g5422 1394 Pfam ABC transporter transmembrane region 85 350 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g5422 1394 Pfam ABC transporter transmembrane region 829 1083 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g5422 1394 SUPERFAMILY ABC transporter transmembrane region 811 1130 IPR036640 GO:0005524|GO:0016021
Psa6g5422 1394 Pfam ABC transporter 1163 1311 IPR003439 GO:0005524
Psa6g5422 1394 Pfam ABC transporter 421 565 IPR003439 GO:0005524
Psa6g5422 1394 SUPERFAMILY ABC transporter transmembrane region 71 375 IPR036640 GO:0005524|GO:0016021
Psa6g5422 1394 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 375 - -
Psa6g5422 1394 Gene3D ABC transporter type 1, transmembrane domain 763 946 IPR036640 GO:0005524|GO:0016021
Psa6g5422 1394 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 19 1390 - -
Psa6g5422 1394 MobiDBLite consensus disorder prediction 655 682 - -
Psa6g5422 1394 MobiDBLite consensus disorder prediction 749 789 - -
Psa6g5422 1394 CDD ABC_6TM_Pgp_ABCB1_D2_like 819 1128 - -
Psa6g5422 1394 Gene3D ABC transporter type 1, transmembrane domain 71 646 IPR036640 GO:0005524|GO:0016021
Psa6g5422 1394 Gene3D ABC transporter type 1, transmembrane domain 950 1134 IPR036640 GO:0005524|GO:0016021
Psa6g5422 1394 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 367 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g5422 1394 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1145 1382 IPR003439 GO:0005524
Psa6g5422 1394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1135 1381 IPR027417 -
Psa6g5422 1394 Gene3D - 390 637 IPR027417 -
Psa6g5422 1394 Gene3D - 1135 1382 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5422 Psa-Chr6 471723797 471732463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5422 59 692 Calmodulin-binding Proteins AT2G36910 42.923 3.36e-161 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5422 K05658 - gmx:100799399 2487.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5422 6 471723797 471732463 Psa6g5422 6 471723797 471732463 ECH