Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5418 ATGGCAATCTACAGAATAGCAATTGGATCTCCTAGAGAGGCTAGTAATCCTGCTGCCATTAGAGCAGCTTTCGCAGAATTCTTTTCAATGATCATTTTTGTTTTTGCCGGCCAAGGCTCCGGCATGGCATATACCAAACTTACAAAGAATGGAGGTGCAACTCCTGAAGGTCTGATAGTGGCATCATTGTCTCATGCATTTGGGTTGTTTGTAGCTGTTTCTGTTGGTGCAAACATTTCTGGTGGTCATGTCAACCCTGCAGTCACATTTGGTGCTTTTATCGGAGGAAATATTACATTCTTGAGAAGTATTTTGTATTGGATTGCACAGTTACTTGGTTCTGTTGTTGCTTGTGTTCTTCTCAATTCCTGCACTGGTGGAATGGAAGTATCAGCTTTCTCTCTATCCTCAGGTGTGTCAGTATGGAATGCATTAGTTTTTGAGATAGTGATGACATTTGGATTGGTATATACGGTTTATGCAACAGCAATAGATCCAAAGAAAGGGAATGTTGGTATTGTAGCACCACTAGCAATTGGTTGTATTGTGGGTGCAAATATCTTAGTTGGGGGTGTGTTTGATGGTGCATCAATGAATCCAGCAGTGTCATTTGGGCCTGCTGTGGTTAGTGGAACATGGACTCATCATTGGGTCTATTGGGCTGGCCCATTCATTGGTTCAGCAACTGCTGCTATTCTTTATGATAATATCTTTATTGGTGATGATGCTGATCATGAAGCTCTTTCAAATAGTGATTTTTAG 762 0.4121 MAIYRIAIGSPREASNPAAIRAAFAEFFSMIIFVFAGQGSGMAYTKLTKNGGATPEGLIVASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITFLRSILYWIAQLLGSVVACVLLNSCTGGMEVSAFSLSSGVSVWNALVFEIVMTFGLVYTVYATAIDPKKGNVGIVAPLAIGCIVGANILVGGVFDGASMNPAVSFGPAVVSGTWTHHWVYWAGPFIGSATAAILYDNIFIGDDADHEALSNSDF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5418 253 Pfam Major intrinsic protein 15 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g5418 253 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Psa6g5418 253 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g5418 253 PANTHER AQUAPORIN-8 1 249 IPR034294 -
Psa6g5418 253 SUPERFAMILY Aquaporin-like 16 240 IPR023271 -
Psa6g5418 253 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Psa6g5418 253 PANTHER AQUAPORIN TIP1-1 1 249 - -
Psa6g5418 253 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g5418 253 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g5418 253 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g5418 253 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g5418 253 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g5418 253 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5418 Psa-Chr6 471659417 471661296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5418 1 253 Major Intrinsic Protein MIP AT4G01470 79.842 3.08e-142 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5418 K09873 - gmx:100818197 444.891