Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5417 ATGGTTCTATCGAATAAGAAGCTTAAACAGAAGCTTAGAGCTGAATTAACCCTAAACCAAATCAACACCGAATCGAATCCCTCATCTTCATCTTCCAACTCTTTCAAACTTCTTCTAAACTCTTCCACCAACAAACCCATTTTGTCTAAGAGAGAGAAACTCCGAAAGGGGAAAATTAAGGTAGAGAAACAGACTGATGATGTTGGTGATGAGGTTGTTGTTAAGAAGGGGAAAGTAAAGGTAGAGAAACAGAATGGTGATGTTGGTGATGAGGTTGTTGTTAAGGTGACGAAACAATCGGTGAAAAAGGAGAAGCAAAAGAAGAAGAATCTGCTGAAGAAGAAGAGAAAGAAAGCTAAAGCTGCAGAGGAAAATGGTAAGGTCAAAACTGCTGAGGAAAATGGTGTGGTCACAGCTGCTGAGGGAAGTGGTTCTAATCATCAAGAGGAAATATCAGAGCTTACTACAGATTTGGCTAATACCAATATCACTACCCGTCAAGAAAGTGGTGATGCTGCTACAAAAGTTTATGTTGGAGGAATTCCCTACTATTCAAGTGAGGATGACATTCATAGTTATTTTGAAAGCTGTGGCACCATCACTGAAATTAATTGCATGACTTTTCCTGACACTGGAAAGTTCAGAGGGATTGCAATAATCGTTTTTAAGACTGAAGCAGCGGCCAAACGAGCATTGGCTCTTGATGGATCTGACATGGGAGGACTCTTTCTTAAAATCCAACCGTATAAAGCAGCTCAAACAACCCGATTTACTCCAGAACTGAAAGAGGGATATAATAGAATTTACGTTGGAAGTTTATCGTGGGAAATAACAGAGGAAGAACTGAGGAAATTCTTCTCAAATTGCAATATAAAGTCCATACGATTAGGGAAGGACAAGGAAACAGGAGAATTCCGAGGGTATGCTCATGTGGATTTCAGTGATAGTAAGTCACTCAAGACAGCACTTGCATTGGATCAAAGCGTTTTGTTTGGAAGGCCTGTCCGGATAAGTTGTGCAGTTCCTTTGAATAAAAAACCAGGTGCAGGTGAAAAATCAGTCGCAGGCTCGAAACCAAGTGCAGTTGAAAAATCAGTTGCAGGTTCTAAACCAAGTGCAGGAGAAAAGTCAGTTGCAGGCCAAAAACCAGACGCAGGTGAAACGGTTGCGGTTGAGGAACCAACTGTTGAGAAACCAATTACCGTCGTTGCAAGTGGCAAGAGGAAGAATAGGATGTGTTACGGGTGTCGTCAAAAAGGACATAACCTCTCAGAATGTCCAAACCCGCAAATATTTACTTCTACAATCTAA 1311 0.4104 MVLSNKKLKQKLRAELTLNQINTESNPSSSSSNSFKLLLNSSTNKPILSKREKLRKGKIKVEKQTDDVGDEVVVKKGKVKVEKQNGDVGDEVVVKVTKQSVKKEKQKKKNLLKKKRKKAKAAEENGKVKTAEENGVVTAAEGSGSNHQEEISELTTDLANTNITTRQESGDAATKVYVGGIPYYSSEDDIHSYFESCGTITEINCMTFPDTGKFRGIAIIVFKTEAAAKRALALDGSDMGGLFLKIQPYKAAQTTRFTPELKEGYNRIYVGSLSWEITEEELRKFFSNCNIKSIRLGKDKETGEFRGYAHVDFSDSKSLKTALALDQSVLFGRPVRISCAVPLNKKPGAGEKSVAGSKPSAVEKSVAGSKPSAGEKSVAGQKPDAGETVAVEEPTVEKPITVVASGKRKNRMCYGCRQKGHNLSECPNPQIFTSTI* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5417 436 MobiDBLite consensus disorder prediction 21 55 - -
Psa6g5417 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 342 IPR000504 GO:0003723
Psa6g5417 436 MobiDBLite consensus disorder prediction 348 388 - -
Psa6g5417 436 MobiDBLite consensus disorder prediction 104 152 - -
Psa6g5417 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 251 IPR000504 GO:0003723
Psa6g5417 436 SUPERFAMILY RNA-binding domain, RBD 259 352 IPR035979 GO:0003676
Psa6g5417 436 Gene3D - 85 257 IPR012677 -
Psa6g5417 436 SMART rrm1_1 175 247 IPR000504 GO:0003723
Psa6g5417 436 SMART rrm1_1 267 338 IPR000504 GO:0003723
Psa6g5417 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 242 IPR000504 GO:0003723
Psa6g5417 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 335 IPR000504 GO:0003723
Psa6g5417 436 SUPERFAMILY Retrovirus zinc finger-like domains 406 429 IPR036875 GO:0003676|GO:0008270
Psa6g5417 436 SUPERFAMILY RNA-binding domain, RBD 165 253 IPR035979 GO:0003676
Psa6g5417 436 CDD RRM1_PHIP1 176 247 IPR034361 -
Psa6g5417 436 CDD RRM2_PHIP1 267 338 IPR034362 -
Psa6g5417 436 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 95 430 - -
Psa6g5417 436 MobiDBLite consensus disorder prediction 21 47 - -
Psa6g5417 436 ProSiteProfiles Zinc finger CCHC-type profile. 413 428 IPR001878 GO:0003676|GO:0008270
Psa6g5417 436 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 95 430 - -
Psa6g5417 436 Coils Coil 94 134 - -
Psa6g5417 436 Gene3D - 258 348 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5417 164 340 Eukaryotic Initiation Factors Gene Family AT2G36660 27.604 6.62e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5417 - - mtr:MTR_1g115375 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5417 6 471600028 471602843 Psa6g5417 6 471600028 471602843 ECH