Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5411 ATGAAGAGAGAAAGAGAAAGTGATCATGATAATACTAATACCATAACCATGGCTAAGTATTTGATGTATCTTTCTGGTGGAGGCCAACAATTTGATCAAGTGAGTTACTCTTCGAATTTCAACAACCGTGTGTTCGAGTGCAAGACATGTAATCGACAGTTTTCGTCGTTTCAAGCGTTGGGAGGACACCGTGCGAGTCACAAGAAATCGAGGTTGATGGAGATGAACAGCGTCGGCGATGGTGGAATATGTACAACAACAACAAAAGCTAAAACACATGAATGTTCAATTTGTGGGTTGGAGTTTTCAATAGGTCAAGCTTTGGGTGGTCACATGAGAAGACACAGAAGAGTTTTGAATAATACAAATGGAAATAAGCATACTTTTATCAGTAATACTGCAACCACTAGTAGTAATAGTGGTTCCAGTACCGTTGATAATAGTACTAATATCAATTTAGCGAAGTGGAACAAGGTGAACATCAAAAGATTTTTGTCTCTGGATTTGAATTTAACACCTTTAGAGAATGATTTGAAGATTTTGAAGATTGGACGATCAACTCCTAATTTAGTGGACTGTTTCAATTTAGTGGACAATCAACTCCTAATTTAG 612 0.3725 MKRERESDHDNTNTITMAKYLMYLSGGGQQFDQVSYSSNFNNRVFECKTCNRQFSSFQALGGHRASHKKSRLMEMNSVGDGGICTTTTKAKTHECSICGLEFSIGQALGGHMRRHRRVLNNTNGNKHTFISNTATTSSNSGSSTVDNSTNINLAKWNKVNIKRFLSLDLNLTPLENDLKILKIGRSTPNLVDCFNLVDNQLLI* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5411 203 Gene3D Classic Zinc Finger 41 65 - -
Psa6g5411 203 PANTHER ZINC FINGER PROTEIN ZAT5 16 181 - -
Psa6g5411 203 SUPERFAMILY beta-beta-alpha zinc fingers 43 115 IPR036236 -
Psa6g5411 203 PANTHER ZINC FINGER PROTEIN ZAT12 16 181 - -
Psa6g5411 203 Gene3D Classic Zinc Finger 83 150 - -
Psa6g5411 203 Pfam C2H2-type zinc finger 93 117 - -
Psa6g5411 203 Pfam C2H2-type zinc finger 44 69 - -
Psa6g5411 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Psa6g5411 203 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Psa6g5411 203 SMART c2h2final6 45 67 IPR013087 -
Psa6g5411 203 SMART c2h2final6 93 115 IPR013087 -
Psa6g5411 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Psa6g5411 203 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5411 Psa-Chr6 471488697 471489839 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5411 1 185 C2H2 Transcription Factor Family AT2G28710 40.000 9.47e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g5411 zf-C2H2_6 4.1e-10 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5411 6 471488697 471489839 Psa6g5411 6 471488697 471489839 ECH