Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5408 ATGGTGAACATGATGGAATGGCATAAACAAGTTCAGAACGGAAATGTCGACGCGATGTATGTCAAAGTCATGACTGATGAACAATTGGAAACTCTCCGGAAACAAATTGCTGTTTATGCTACAATCTGTGAACAGCTTGTGGAGATGCATAAAACACTCTCTGCTCAACAAGATCTTGCAGGGGTTAGGCTGGGAAATATATACTGTGATCCATTGATGACATCTGGTCACAAAATCACATCAAGACAGAGGTGGACTCCTACACAGGATCAGCTCCAGATTCTCGAACGCATATTTGATCAGGGAAATGGAACTCCAAGCAAAGAAAAAATCAAGGAAATTGCTACAGAACTAAGCCAGCATGGTCAAATATCTGAAACAAATGTTTATAATTGGTTCCAAAATAGGCGTGCTAGATCGAAAAGAAAAATGCAAAACGGGGGAACTAGTAACACTGAATCAGAGGTAGAGACGGAGGTTGATTCCAAAGATAAGAAGACAAAACCTGAGGAATTTCAGTCTCATCAAAATGTTGCTGCAGGGGATGAAAATTTGTGCTACCAGAACCCTGAAAAAGGATCTGAATTGCCGTACTTGAATCCAGATTCTAACAAAACATATTCAATGTTTCAATCGGATGGTAGCATAAGATCTACAAGAAATTTGAACGGTGCGTCTCTTTATGATGAAGTGCTATCAAACTCAAGGAATGATTATCTAGCTGGAAAAATGGAAGTACCTGGGAGCTACAATTTATACCAGCAAACAGATGACTATAATTTGGCAGGTTGA 792 0.3952 MVNMMEWHKQVQNGNVDAMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLSAQQDLAGVRLGNIYCDPLMTSGHKITSRQRWTPTQDQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSKRKMQNGGTSNTESEVETEVDSKDKKTKPEEFQSHQNVAAGDENLCYQNPEKGSELPYLNPDSNKTYSMFQSDGSIRSTRNLNGASLYDEVLSNSRNDYLAGKMEVPGSYNLYQQTDDYNLAG* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5408 263 Gene3D - 83 148 - -
Psa6g5408 263 CDD homeodomain 82 144 IPR001356 GO:0003677
Psa6g5408 263 ProSiteProfiles 'Homeobox' domain profile. 78 143 IPR001356 GO:0003677
Psa6g5408 263 SMART HOX_1 80 147 IPR001356 GO:0003677
Psa6g5408 263 Pfam Homeodomain 82 142 IPR001356 GO:0003677
Psa6g5408 263 PANTHER WUSCHEL-RELATED HOMEOBOX 13 3 262 IPR044559 GO:0003700
Psa6g5408 263 PANTHER - 3 262 - -
Psa6g5408 263 MobiDBLite consensus disorder prediction 140 170 - -
Psa6g5408 263 MobiDBLite consensus disorder prediction 156 170 - -
Psa6g5408 263 SUPERFAMILY Homeodomain-like 81 145 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5408 Psa-Chr6 471377523 471380811 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5408 4 263 Wox Gene Family AT4G35550 50.000 9.59e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Psa6g5408 Homeodomain 1.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5408 - - gmx:100815539 377.096