Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5398 ATGACGAAAGGTACGAAAAGGGTTGACGCTGTTGATTCCGCTTCCGCTCTCGTTCGTGCCAAAGATGGCAGCGCCTTCGCCAAATGTGACGAGTGTAAGAAGAATGTTCCTGTTGCACTCATTAGCATGCATGATTGTAGCCTTGAAGCCAAAATCAAAATGAATCTTGATTCTCATGTTGTTGAGCAAGCTGCTGCTGAAGCGAAGAAACCTGAGAGGAAGAAGCCTAGTACTAAAGAACCTGTTGCAAAAAGAGCTAAGGGTGGGAAAGATAAGAAGGAGAAGAAGGTTAAGGATCCTAACATGCCCAAACGTCCTGCCACTGCTTTCTTTGTCTTCATGGATGATTTTAGAAAAACTTTTAAGGAAGCTAATCCTGATTCAAAGGATGTTAAAAGGGTTGCTAAGGAAGGGGGTGAGAAGTGGAAGTCTTTGACTGATGAAGAGAAGAAACCTTATTTGGATAGAGTTGCTGAACTCAAGGCAGAATATGAGAAAGCTATGGAAGCGTATAATGCTGGTGAAAAAGAAGATCAAGAAGGATCTGAGAAGTCTGATAAGGAAGCCCCTGCTGCAGGAGAGGTTGAAGAGTTAACTGATGAAGAGTAG 609 0.4302 MTKGTKRVDAVDSASALVRAKDGSAFAKCDECKKNVPVALISMHDCSLEAKIKMNLDSHVVEQAAAEAKKPERKKPSTKEPVAKRAKGGKDKKEKKVKDPNMPKRPATAFFVFMDDFRKTFKEANPDSKDVKRVAKEGGEKWKSLTDEEKKPYLDRVAELKAEYEKAMEAYNAGEKEDQEGSEKSDKEAPAAGEVEELTDEE* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5398 202 MobiDBLite consensus disorder prediction 170 202 - -
Psa6g5398 202 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 188 - -
Psa6g5398 202 Pfam HMG (high mobility group) box 103 172 IPR009071 -
Psa6g5398 202 CDD HMGB-UBF_HMG-box 103 169 - -
Psa6g5398 202 MobiDBLite consensus disorder prediction 124 148 - -
Psa6g5398 202 MobiDBLite consensus disorder prediction 63 102 - -
Psa6g5398 202 Gene3D High mobility group box domain 85 187 IPR036910 -
Psa6g5398 202 SMART hmgende2 102 173 IPR009071 -
Psa6g5398 202 MobiDBLite consensus disorder prediction 63 105 - -
Psa6g5398 202 Coils Coil 157 177 - -
Psa6g5398 202 MobiDBLite consensus disorder prediction 170 194 - -
Psa6g5398 202 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 103 172 IPR009071 -
Psa6g5398 202 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 188 - -
Psa6g5398 202 SUPERFAMILY HMG-box 90 172 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5398 Psa-Chr6 471036810 471038501 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Psa6g5398 HMG_box 3.2e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5398 K25507 - gmx:100810345 280.796