Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5387 AAAATTGCATTGGCTTGGATGCTTCAGAGGGAAAACAGGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCAACGATTGCTCTCATCCTAATGCAAAGGCAGTTACAAATAAAATGGAAAACAGATGATACATGCAACCATAAAGCTGAAGCCTTGAATTTGGATGATGATGATGATAATGGTAGTATTGATGTGGAAAAGCTTAAAAATGATGAAGAATCCAATGATACAAAACCTATTATTGAACCGAGTAGTTCAACACGGGCGCCAAGTAGGAAAAGGCCTGCTGCTGGTACATTGGTTGTCTGCCCTGCAAGTGTTCTTCGGCAGTGGGCCAGAGAACTTGAAGAGAAAGTTGGAGATGAAAAGCTTTCTGTCTTGATCTTTCACGGGGGCAGTAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTGGTTCTCACAACATACTCTCTTGTGACTAATGAAGTTCCCAAGCAACCGATAGTTGAGGATGATGATATTGATGAAAAAGAAGGCGAAAATTTTGGCTTATCCTCTGATTTTTCTGTCAAGAAAAAGAGGAAAAAGACATATAATGGAAGTAAGAAGGGTAAAAAAGGTAAAAAGGGAATAGATGGTTCTTCTTTCGATTCTGCTTCTGGCGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACTATAAAGAATCATAGAACTCAGATGGCCAGAGCTTGCTCCAGCCTTAGGGCCAAAAGAAGGTGGTGCTTGTCTGGCACGCCTATTCAGAATACTATTGATGATTTATATAGCTACTTTAGGTTTCTGAAGTATGATCCTTATACTGTGTATAAATCATTCTACAATACAATAAAAGTCCCAATATCCAGAAATTCTATTCATGGTTACAAAAAACTTCAAGCAGTTTTGAGGGCCATAATGCTACGTCGTACGAAAGGAACTTTGCTTGATGGCAAGCCGATAATCACTTTACCTCCTAAAACAATTAATTTGAGTAAGGTGGATTTCTCGAATGAAGAGCGGGCCTTCTACAAGAAGTTGGAAGCTGATTCACGTTCTCAATTTAAGGCATATGCAGCTGCTGGCACAGTGAATCAAAACTATGCAAACATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTTCTTGTTAAAGAATACAACTCTGATCCTGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTCTGGAAACAACTGCTGCTATATGTTGTGTCTGCAGTGATCCACCCGACGACGCTGTTATTTCAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGAACATTTGACAGGTGACGATAATATGTGCCCTGCAAATCATTGTAAAGAACAAATTGGTGAAGATCTTGTTTTCTCCAAAGCAACTTTAAGGAGTTGCATCTCTGACGATCTTAGTGGCAGTAGTTCTGGAAATTCGAGCCTTGTTGATTATTCAATAGTACAAAATAGTGATTACAGCTCATCTAAAATCAAAGCCGTCCTTGAAGTTCTGCAGTCAAGTTGCAGATTGAAGGCTAATTCTGGCAATATAGATTCACCGCCTTCTGACGACTCAGATATTGAAGATTTTGATTCAGATGTTAAGGTTACAAAAGTCACAAGAAATTATTCAGAGTGCACAACTGGTGGACCGCTAAAGGCCATCATTTTTTCTCAATGGACTACCATGTTGGACTTAGTTGAGACATCAATGCAACAGTCTGGCATAAAATACAGGAGACTTGATGGTAGGATGACTCTGACTGCGAGGGATAGAGCTGTTAAGGATTTCAATACAGATCCTAAGATTACTGTTATGCTGATGTCTCTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAGACTCGTCCCGTTACTGTGACACGCATCACCATAAAAGATACAGTTGAAGATAGAATACTGGCTCTTCAGGATGAAAAAAGAAAAATGGTGGCATCTGCTTTCGGTGAAGACCATGCTGGCGGTTCTGGAACTCGGCTTACAGTCGACGATCTTAAATATCTTTTCATGGTATAG 2220 0.3982 KIALAWMLQRENRSLHCLGGILADDQGLGKTISTIALILMQRQLQIKWKTDDTCNHKAEALNLDDDDDNGSIDVEKLKNDEESNDTKPIIEPSSSTRAPSRKRPAAGTLVVCPASVLRQWARELEEKVGDEKLSVLIFHGGSRTKDPVELAKYDVVLTTYSLVTNEVPKQPIVEDDDIDEKEGENFGLSSDFSVKKKRKKTYNGSKKGKKGKKGIDGSSFDSASGALAKVGWFRVILDEAQTIKNHRTQMARACSSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYTVYKSFYNTIKVPISRNSIHGYKKLQAVLRAIMLRRTKGTLLDGKPIITLPPKTINLSKVDFSNEERAFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPVGKDSVEMAKRLPKEMLINLFNSLETTAAICCVCSDPPDDAVISMCGHVFCYQCVSEHLTGDDNMCPANHCKEQIGEDLVFSKATLRSCISDDLSGSSSGNSSLVDYSIVQNSDYSSSKIKAVLEVLQSSCRLKANSGNIDSPPSDDSDIEDFDSDVKVTKVTRNYSECTTGGPLKAIIFSQWTTMLDLVETSMQQSGIKYRRLDGRMTLTARDRAVKDFNTDPKITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQDEKRKMVASAFGEDHAGGSGTRLTVDDLKYLFMV* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5387 739 Gene3D - 340 738 IPR027417 -
Psa6g5387 739 MobiDBLite consensus disorder prediction 76 104 - -
Psa6g5387 739 Gene3D - 1 54 IPR038718 -
Psa6g5387 739 Gene3D - 193 338 IPR038718 -
Psa6g5387 739 SMART ultradead3 1 304 IPR014001 -
Psa6g5387 739 Gene3D - 90 179 IPR038718 -
Psa6g5387 739 CDD DEXDc_SHPRH-like 1 325 - -
Psa6g5387 739 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 11 287 IPR014001 -
Psa6g5387 739 Pfam Helicase conserved C-terminal domain 586 681 IPR001650 -
Psa6g5387 739 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 1 738 - -
Psa6g5387 739 SMART helicmild6 598 681 IPR001650 -
Psa6g5387 739 SMART ring_2 441 479 IPR001841 -
Psa6g5387 739 CDD SF2_C_SNF 586 690 - -
Psa6g5387 739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 491 IPR013083 -
Psa6g5387 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 738 IPR027417 -
Psa6g5387 739 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 571 734 IPR001650 -
Psa6g5387 739 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 738 - -
Psa6g5387 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 325 IPR027417 -
Psa6g5387 739 ProSitePatterns Zinc finger RING-type signature. 456 465 IPR017907 -
Psa6g5387 739 ProSiteProfiles Zinc finger RING-type profile. 441 480 IPR001841 -
Psa6g5387 739 Pfam Zinc finger, C3HC4 type (RING finger) 441 477 IPR018957 GO:0046872
Psa6g5387 739 SUPERFAMILY RING/U-box 439 493 - -
Psa6g5387 739 Pfam SNF2-related domain 16 402 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5387 Psa-Chr6 470444976 470448832 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5387 1 639 RAD5 or RAD16-like Gene Family AT1G50410 63.910 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa6g5387 SNF2_N 2.3e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5387 - - gmx:100795142 1177.54