Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5386 ATGCATGTTGGCCGAGGAAAGAGAAATTGTTATCTAGATTCCATGGACATTGCGGATATAGATATTAGTTCGTTGGATGATGAATTGGAGATGATAGATCCAGGGAGAACTCTCCCAAGATGGGCTGCTTCTGAAAGGAATTCAGATTCAACAAGGGCAAATGGAAACACAAGTCATCATCAGACAGTAAATTCCCGAATCTCTAATTCTCATGGTACCGATTATGAGAAAATGTCATCTCAACAAGCTTTCAAGAGGACCCTTCCACCATCTGAAACAAGGGCTTTTCCATCTTCATCGTTTGCACCTAATAACAGAGTAAGCAACTTAAGTAGCACTCAACTTCATGATGCATACAGGAGTCGTCACCATGGAGTAGGTGAGAAGGGCTTTTTCCATGACAATTTTGGCAGAGGCAATGATGGAGATCGTTTCATGAATCAGAATGGCGGGACCAGAGCTCTTCCTCCAACTTTTATGATTGGAAAGACAATAACTCCACCATTTGATAGTTCTAGTAAGTCTGGAGTAGGTGATGAAAGGGCTCGATATGAAGCAGCAATACAGGATATCAGTCAACCATTAAAAGAAGCCGATTTACCTGCTGGTATAATGGCTGTCCCTCTTATGAGACATCAGAAACTTGCATTGGCTTGGATGCTAAAGAGGGAAAACAGGAGTTTGCATTGCTCGGGGGGGATTTTGGCTGATGATCAGGGTCTTGGAAAGACAATTTCAACGATTGCTCTGATCCTAATGCAAAGGCAATTACAGATAAATTGGAAAACAGATGATACATGCAACCATAAAGCTGAAGCCTTGAATTTGGATGATGATGATGATAATGGTAGTATTGATGTGGAAAAGCTTAAAAATGATGAAGAATCCAATGATACAAAACCTATTATTGAACCGAGTAGTTCAACACGGGCACCAAGTAGGAAAAGGCCTGCTGCTGGTACATTGGTTGTCTGCCCTGCAAGTGTTCTTCGGCAGTGGGCCAGAGAACTTGAAGAGAAAGTTGGAGATGAAAAGCTTTCTGTCTTGATCTTTCACGGGGGCAGTAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTGGTTCTCACAACATACTCTCTTGTGACTAATGAAGTTCCCAAGCAACCGATAGTTGAGGATGATGATATTGATGAAAAAGAAGGCGAAAATTTTGGCTTATCCTCTGATTTTTCTGTCAAGAAAAAGAGGAAAAAGACATATAATGGAAGTAAGAAGGGTAAAAAAGGTAAAAAGGGAATAGATGGTTCTTCTTTCGATTCTGCTTCTGGCGCTCTTGCAAAA 1326 0.4103 MHVGRGKRNCYLDSMDIADIDISSLDDELEMIDPGRTLPRWAASERNSDSTRANGNTSHHQTVNSRISNSHGTDYEKMSSQQAFKRTLPPSETRAFPSSSFAPNNRVSNLSSTQLHDAYRSRHHGVGEKGFFHDNFGRGNDGDRFMNQNGGTRALPPTFMIGKTITPPFDSSSKSGVGDERARYEAAIQDISQPLKEADLPAGIMAVPLMRHQKLALAWMLKRENRSLHCSGGILADDQGLGKTISTIALILMQRQLQINWKTDDTCNHKAEALNLDDDDDNGSIDVEKLKNDEESNDTKPIIEPSSSTRAPSRKRPAAGTLVVCPASVLRQWARELEEKVGDEKLSVLIFHGGSRTKDPVELAKYDVVLTTYSLVTNEVPKQPIVEDDDIDEKEGENFGLSSDFSVKKKRKKTYNGSKKGKKGKKGIDGSSFDSASGALAK 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5386 442 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 46 442 - -
Psa6g5386 442 CDD DEXDc_SHPRH-like 209 411 - -
Psa6g5386 442 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 46 442 - -
Psa6g5386 442 MobiDBLite consensus disorder prediction 289 317 - -
Psa6g5386 442 MobiDBLite consensus disorder prediction 41 71 - -
Psa6g5386 442 Pfam SNF2-related domain 212 381 IPR000330 GO:0005524|GO:0140658
Psa6g5386 442 SMART ultradead3 205 442 IPR014001 -
Psa6g5386 442 MobiDBLite consensus disorder prediction 402 442 - -
Psa6g5386 442 MobiDBLite consensus disorder prediction 43 71 - -
Psa6g5386 442 Gene3D - 302 392 IPR038718 -
Psa6g5386 442 Gene3D - 181 267 IPR038718 -
Psa6g5386 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 382 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5386 Psa-Chr6 470433292 470436086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5386 63 442 RAD5 or RAD16-like Gene Family AT1G50410 49.153 5.40e-106 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa6g5386 SNF2_N 1.2e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5386 - - gmx:100811598 530.791