Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5385 ATGCTACGTCGTACAAAAGAAACTTTGCTTGATGGCAAGCCGATAGTCACTTTACCTCCTAAATCAATTAATTTGAGTAAGGTGGATTTCTCGTGTGAAGAGCGGGCCTTCTACAAGAAGTTGGAAGCTGATTCACGTTCTCAATTTAAGGCATATGCAGCTGCTGGCACAGTGAATCAAAACTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGCCAGGCTTGTGATCATCCACTTCTTGTTAAAGAATACAATTCTGATCCTCTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTCTGGAAACAACTGCCGCTATATGTTGTGTCTGCAACGATCCACCCGACGACGCTGTTATATCAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGAACATTTGACAGGTGACGATAATATGTGCCCTGCAAATCATTGTAAAGAACAAATTGGTGAAGATCTTGTTTTCTCCAAAGCAACTTTAGGGAGTTGCATCTCTGACGATCTTAGTGGCAGTAGTTCTGGAAATTCAAGCTTTGTTGATTATTCAATAGTACAAAATAGTGATTACAGCTCATCTAAAATCAAAGCCGTCCTTGAAGTTCTGCAGTCAAGTTGCAGATTGAAGGCTAATTCTGGCAATAGAGATTCACCGCCTTCTGATGACTCAGATATTGAAGATTTTGATCCAGATGTCAAGGTTACAAAAGTCACAAGAAATTATTCAGAGTGCACAACTGGTGGACCGCTAAAGGCTATCATTTTTTCTCAATGGACTACCATGTTGGACTTAGTTGAGACATCAATGCAACAGTCTGGCATAAAATACAGGAGACTTGATGGTAGGATGACTCTCACTGCGAGGGATAGAGCTGTTAAGGATTTCAATACAGATCCTGAGATTACTGTTATGCTGATGTCTCTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAAACTCGTCCAGTTACTGTGACACGCATCACCATAAAAGATACAGTTGAAGATAGAATACTGGCTCTTCAGGATGAAAAAAGAAAAATAGTGGCGTCTGCTTTCGGTGGAGACCTTGCTGGCGATTATGGAATTCGGCTTACAGTCGACGATCTTAGATATCTTTTCATGGTATAG 1257 0.3994 MLRRTKETLLDGKPIVTLPPKSINLSKVDFSCEERAFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPLGKDSVEMAKRLPKEMLINLFNSLETTAAICCVCNDPPDDAVISMCGHVFCYQCVSEHLTGDDNMCPANHCKEQIGEDLVFSKATLGSCISDDLSGSSSGNSSFVDYSIVQNSDYSSSKIKAVLEVLQSSCRLKANSGNRDSPPSDDSDIEDFDPDVKVTKVTRNYSECTTGGPLKAIIFSQWTTMLDLVETSMQQSGIKYRRLDGRMTLTARDRAVKDFNTDPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQDEKRKIVASAFGGDLAGDYGIRLTVDDLRYLFMV* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5385 418 SMART helicmild6 277 360 IPR001650 -
Psa6g5385 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 416 IPR027417 -
Psa6g5385 418 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 417 - -
Psa6g5385 418 CDD SF2_C_SNF 265 369 - -
Psa6g5385 418 Gene3D - 19 403 IPR027417 -
Psa6g5385 418 ProSiteProfiles Zinc finger RING-type profile. 120 159 IPR001841 -
Psa6g5385 418 Pfam Zinc finger, C3HC4 type (RING finger) 119 164 - -
Psa6g5385 418 Pfam SNF2-related domain 1 81 IPR000330 GO:0005524|GO:0140658
Psa6g5385 418 SUPERFAMILY RING/U-box 118 161 - -
Psa6g5385 418 ProSitePatterns Zinc finger RING-type signature. 135 144 IPR017907 -
Psa6g5385 418 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 250 413 IPR001650 -
Psa6g5385 418 SMART ring_2 120 158 IPR001841 -
Psa6g5385 418 MobiDBLite consensus disorder prediction 224 243 - -
Psa6g5385 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 170 IPR013083 -
Psa6g5385 418 Pfam Helicase conserved C-terminal domain 265 360 IPR001650 -
Psa6g5385 418 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 1 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5385 Psa-Chr6 470429499 470432665 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5385 1 418 RAD5 or RAD16-like Gene Family AT1G11100 55.035 7.74e-147 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa6g5385 Helicase_C 1.4e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5385 - - gmx:100795142 646.351