Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5368 ATGTCGGAAGCACCGTCTCAGCCACCACTCCCTGCATCCGAAACAGCTCCTTACTGGTGCTACCACTGCGACAAACACGTATCCGTTGAAACGGTCGCTAATGTTCCTGACGTCATCTGCGGCGATTGCAAAAACGGTTTCGTCGAATCCATCTCCACACCTTCTCGAACTCGCTCCCCTTCTTCCTCCTCCGATGATCCTTACTTTGGTTCACAATTTCTTCAGGTTCTTCGCCTAATCGCTGAATCGTCGCGTGAAGACGACGCGTCTCCTCCCCCTCCTCCAAGTCGTTCTCCGGAGGATGATTTTCTTAGAATCGAACTCGGTGGTTGGAACCACAACGATGAAGACGATGATGATGCGTTTCACACCGACGGTGAAGATGACGAAGGTAGCGTCGAGGAGGTGGAAGATCGACCTGGAAACGAGGATCCGAATATGGACGATGAAGATATGAGACGAAGGAGACGCGATCTGTTACGGCATCGGATTAGGGATTTGGCGACCCGAACCCGAAGTATGCAGAATCGGATCTTGGATTGGGCCGAGATTCTAATGGGACTGGAAGACAATTCTATTGAGTTTCGTCTTCAGGGGCCGGAGTCAGAGCGTTATGTCGGGAATCCAGAGGATTACGTTGATGCCGCGGATTATGAAGCGTTGCTGCAGACACTAGCGGAGAGTGACGGAAGTGGGAGGAGAGGAGCTCCGCCGGCGTCAAAGTCTGCTTTGGAAGGTTTACCGACGGTTAAGATTGCGTCGGAGAGTGAAGTGGTTGCTTGTGCTGTATGTAAGGATATGCTTGGTGTTGGAGACATGGCGAAGAGATTGCCGTGTGGGCATGAGTATCATGGAGATTGCATTGTTCCATGGTTGACTAGTAGAAATTCTTGTCCTGTTTGCAGGTTTGAGCTTCCAACTGATGATAAAGAGTATGAAGAAGAGAGAGCTTCAGGTTCGGGTCGAGGTGGAGCTTCCACCTTTTGA 987 0.5086 MSEAPSQPPLPASETAPYWCYHCDKHVSVETVANVPDVICGDCKNGFVESISTPSRTRSPSSSSDDPYFGSQFLQVLRLIAESSREDDASPPPPPSRSPEDDFLRIELGGWNHNDEDDDDAFHTDGEDDEGSVEEVEDRPGNEDPNMDDEDMRRRRRDLLRHRIRDLATRTRSMQNRILDWAEILMGLEDNSIEFRLQGPESERYVGNPEDYVDAADYEALLQTLAESDGSGRRGAPPASKSALEGLPTVKIASESEVVACAVCKDMLGVGDMAKRLPCGHEYHGDCIVPWLTSRNSCPVCRFELPTDDKEYEEERASGSGRGGASTF* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5368 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 308 IPR013083 -
Psa6g5368 328 SUPERFAMILY RING/U-box 256 308 - -
Psa6g5368 328 SMART ring_2 261 301 IPR001841 -
Psa6g5368 328 MobiDBLite consensus disorder prediction 124 145 - -
Psa6g5368 328 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 32 318 - -
Psa6g5368 328 MobiDBLite consensus disorder prediction 124 154 - -
Psa6g5368 328 Pfam zinc-ribbon 17 51 IPR039525 GO:0061630
Psa6g5368 328 ProSiteProfiles Zinc finger RING-type profile. 261 302 IPR001841 -
Psa6g5368 328 Pfam Zinc finger, C3HC4 type (RING finger) 261 301 - -
Psa6g5368 328 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 32 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5368 Psa-Chr6 469178322 469179308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5368 172 314 C3H Transcription Factor Family AT5G01980 47.333 2.87e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5368 - - adu:107467499 470.314