Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5355 ATGCTGCCTGATGGTTTTGTCATTAATATCAAACTCAAAATTGTTTTCCTTGTCCTTGTGTACTCCCCCTTAGTAGTATTTGAATTGGGACCTATAATAATTGTTATAACCTACATATTCAGTGGTGAGAGTGGAGCAGGGAAGACCGAGACAGCAAAAATAGCAATGCAGTACCTGGCTGCCCTAGGTGGTGGAAGTGGAATAGAGCATGAAATATTAAAGACTAATCCAATACTAGAAGCCTTTGGCAATGGAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTTAGTGAAACTGGAAAAATATCTGGTGCTAATATTCAAACATTTTTGTTGGAAAAGTCTAGAGTAGTCCAATGCAATGAAGGGGAAAGGTCATATCATATATTTTATCAGCTATGTGCTGGAGCACCACCATCTCTCAGGGAGAAGCTAAACCTACAAAGTGTGGAAGACTATAAATATCTGAGGCAGAGCAATTGTTATTCAATTACTGGCGTTGACGATGCAGAAGAATTTCGCATAGTCACGGATGCTCTAGATGTTGTCCACATTAGCAAAGGAGACCAGGAGAATGTATTTGCAATGCTTGCTGCAGTGTTATGGTTGGGAAACATATCATTTACTGTGATCGATAATGAAAATCATATTCAAGCCGTTGAGGATGAGGGGCTGTTCAGCACTGCCAAGTTGATTGGATGTGACATTGAAGATCTGAAGTTGACTTTATCAACACGCAAAATGAAAGTTGGTAATGATATTATTGTCCAGAAGTTGACTCTATCTCAGGCTAGTGATGCAAGAGATGCTTTGGCGAAGTCTATATATGCATGTCTGTTTGATTGGCTGGTTGAACAAATAAACAAATCACTAGCTGTTGGCAAAAGAAGAACTGGCAGATCTATCAGTATTCTAGATATTTATGGCTTTGAGTCATTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAAAGATTACAGCAACACTTCAATCGTCATTTATTCAAGTTGGAACAGGAGGAATATATCCAAGATGGCATTGATTGGGCTAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAAAAGAAACCACTGGGGCTATTATCCTTGTTAGACGAGGAGTCTACTTTTCCAAATGGTACTGATTTAACATTTGCCAACAAACTGAAGCAGCATTTGAATTCTAATTCATGCTTCAAAGGAGAACGAGAAAAAGCCTTTACCGTGCGTCATTATGCAGGAGAGGTCACTTATGATACAACTGCATTCTTAGAAAAGAACAGGGACCTATTGCACGTGGATTCCATCCAACTTCTATCCTCAAGCAAATGTCATCTTCCTCAGATATTTGCATCCTATATGCTTACTCAATCTGAGAAGCCTGTAGTTGGTCCCTTGCACAAGTTAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCCACAAAATTCAAGGGACAATTGTTTCAACTGATGCAACGTTTAGAGAGTACCACACCTCATTTTATTCGCTGCATCAAGCCCAATAATCTCCAATCACCTGGATCATATGAGCAAGGACTTGTGCTGCAGCAGTTGAGATGTTGCGGGGTCCTAGAAGTGGTTCGAATATCCCGATCAGGCTTTCCCACTAGAATGTCTCACCAAAAGTTTGCGAAAAGATATGGTTTTCTTCTCCTTGAAAATGATGCATCTCAGGATCCACTTAGTGTTTCTGTTGCTATTCTTCATCAGTTTAACATTTTGCCTGAGATGTATCAAGTTGGCTACACAAAATTATTCTTCCGAACTGGGCAGATTGGAGTGCTCGAAGATACTAGAAATCGTACCCTCCATGGCATTTTACGTGTACAAAGTTGCTTCAGGGGTTATCAAGCTCGTTGTCTTCGCAAGGATCTTTGGAGAGGAATCACTACTCTTCAGTCATTTATTAGAGGAGAGAAAAGCAGAAGGGAGTTTGCAACTTCGCTTCAGAGGCACAGAGCGGCTATTATTATACAGAAGCACTTGAAAACAATATATGCAAGAAACAGAATGAAAATGACCACCGGTGCTGCAGTTGTCATACAGTCATTTATTCGGGGATGGTTAGTAAGAAGATGCTCAGGAGATATAGGATTTTTAAAACCCAGAGGCATGAAGACTAATGAGGCAGATGAGGTTCTGGTGAAGGCGTCTTTCCTAGCTGAATTACAACGCAGGGTCCTTAAGGCGGAAGCTGGCCTGAGAGAGAAAGAAGAGGAAAATGACATCCTTCATCAACGACTTCAACAGTATGAGAGCAGATGGTCTGAATATGAACTAAAAATGAAATCCATGGAAGAAGTATGGCAGAAACAAATGAGATCCTTACAATCAAGCCTCTCCATTGCAAAGAAGAGTCTTGCTATGGACGATTCTGATAGAAATTCAGATGCTTCTGTTAATGCAAGTGAGGACAGGGAATACAGCTGGGATATTGGAAATAATCACAGGCGCCAAGAAAGCAGTGGAACAAGATCTATGAGTGCTGGTTTGAGTGTTATAAGTCGGTTGGCTGAAGAATTTGAGCAAAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTTGAGGTAAAATCTGGTCAAATTGAAGCAAGTCTGAACCCAGACAGAGAGCTTAGAAGGTTAAAACAAATGTTTGAAGGTTGGAAAAAGGACTATGCAACCAGATTGCGTGAAACAAAGGTTATTTTAAATAAACTTGGAAATGAAGATGGTTCATCAATAGAGAAAGCTAAGAAGAAGTGGTGGGGAAGAAGGAACAGTACTAGGATGAGTTGA 2850 0.4011 MLPDGFVINIKLKIVFLVLVYSPLVVFELGPIIIVITYIFSGESGAGKTETAKIAMQYLAALGGGSGIEHEILKTNPILEAFGNGKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPPSLREKLNLQSVEDYKYLRQSNCYSITGVDDAEEFRIVTDALDVVHISKGDQENVFAMLAAVLWLGNISFTVIDNENHIQAVEDEGLFSTAKLIGCDIEDLKLTLSTRKMKVGNDIIVQKLTLSQASDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFKGEREKAFTVRHYAGEVTYDTTAFLEKNRDLLHVDSIQLLSSSKCHLPQIFASYMLTQSEKPVVGPLHKLGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPGSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFAKRYGFLLLENDASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYQARCLRKDLWRGITTLQSFIRGEKSRREFATSLQRHRAAIIIQKHLKTIYARNRMKMTTGAAVVIQSFIRGWLVRRCSGDIGFLKPRGMKTNEADEVLVKASFLAELQRRVLKAEAGLREKEEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAMDDSDRNSDASVNASEDREYSWDIGNNHRRQESSGTRSMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQIEASLNPDRELRRLKQMFEGWKKDYATRLRETKVILNKLGNEDGSSIEKAKKKWWGRRNSTRMS* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5355 949 PANTHER MYOSIN 35 948 - -
Psa6g5355 949 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 35 948 - -
Psa6g5355 949 SMART iq_5 647 669 IPR000048 GO:0005515
Psa6g5355 949 SMART iq_5 673 695 IPR000048 GO:0005515
Psa6g5355 949 SMART iq_5 624 646 IPR000048 GO:0005515
Psa6g5355 949 SMART iq_5 696 718 IPR000048 GO:0005515
Psa6g5355 949 SMART MYSc_2a 8 624 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g5355 949 ProSiteProfiles IQ motif profile. 650 677 IPR000048 GO:0005515
Psa6g5355 949 Gene3D - 319 513 - -
Psa6g5355 949 ProSiteProfiles Myosin motor domain profile. 1 623 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g5355 949 Pfam Myosin head (motor domain) 39 611 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g5355 949 Gene3D - 627 675 - -
Psa6g5355 949 Gene3D - 676 717 - -
Psa6g5355 949 Gene3D - 556 624 - -
Psa6g5355 949 PRINTS Myosin heavy chain signature 35 60 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g5355 949 PRINTS Myosin heavy chain signature 77 104 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g5355 949 PRINTS Myosin heavy chain signature 309 337 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g5355 949 PRINTS Myosin heavy chain signature 362 390 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g5355 949 Pfam IQ calmodulin-binding motif 629 643 IPR000048 GO:0005515
Psa6g5355 949 Pfam IQ calmodulin-binding motif 651 668 IPR000048 GO:0005515
Psa6g5355 949 Pfam IQ calmodulin-binding motif 700 715 IPR000048 GO:0005515
Psa6g5355 949 Gene3D - 133 192 - -
Psa6g5355 949 ProSiteProfiles IQ motif profile. 627 654 IPR000048 GO:0005515
Psa6g5355 949 ProSiteProfiles IQ motif profile. 697 726 IPR000048 GO:0005515
Psa6g5355 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 669 IPR027417 -
Psa6g5355 949 Gene3D Myosin VI head, motor domain, U50 subdomain 194 491 - -
Psa6g5355 949 Gene3D Kinesin motor domain 39 552 IPR036961 -
Psa6g5355 949 MobiDBLite consensus disorder prediction 810 849 - -
Psa6g5355 949 CDD MYSc_Myo8 39 611 IPR036022 -
Psa6g5355 949 Coils Coil 743 791 - -
Psa6g5355 949 MobiDBLite consensus disorder prediction 810 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5355 Psa-Chr6 468768622 468780901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5355 37 947 Myosins gene family AT1G50360 80.044 0.0 1505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5355 - - gmx:100782618 1690.63