Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5354 ATGTCTAACGCCGACGGAACTCCAACAACCACTAACGCCTCAATCATTGACCCACACCGTCAACAGTTAGCCGTCAAGAAACCGCCGTCAAAAGACCGTCACAGTAAAGTAGACGGCCGAGGACGCCGTATTCGCATGCCAATCATATGCGCCGCACGCGTCTTTCAACTCACGCGCGAATTAGGTCACAAATCCGATGGTCAAACCATCGAATGGCTGCTCCGTCAAGCTGAACCTTCTATCATCGCCGCCACCGGGACTGGAACCACTCCGGCGAGTTTCTCATCTCTCTCCGTTTCTCTCCGTGGCTCCAACAATTCTCTCCCCTCTCCTTCCTCCACTTCGCTAGACCACAAACCGCTTCTCTCTCCCACTCCTTTCATTCTCGGGAAACGTTTACGCACCGATGACGATTCGTCTTCTCCGTCGGGGAACGTTAAGGACGACGCTCTTTCTGTTGCTTCTCTTTCTACACCGGCTGCTCTCTGGGCGTTACCTGCACGGCCTGATTTTGGTCAAATTTGGAGCTTCGCTGCCGCGGCTGCTGCTCCTCCGCCGGAAATGGTGGTTCAGTCTTTGGCTCAGCAGCAGCAACAGCATCAAGCGAATTTTTTCGCTCATCATCATCATCAACAACAACAGCAACAAGCTATGGGAGAGGCTTCAGCTGCTAGAGTTGGGAATTATCTTCCTGGACATTTGAATTTGCTTGCTTCATTGTCTGGTGGACATGGAAACTCTGGCCGGAGAGACGATGAACATCATTGA 768 0.5221 MSNADGTPTTTNASIIDPHRQQLAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSVSLRGSNNSLPSPSSTSLDHKPLLSPTPFILGKRLRTDDDSSSPSGNVKDDALSVASLSTPAALWALPARPDFGQIWSFAAAAAAPPPEMVVQSLAQQQQQHQANFFAHHHHQQQQQQAMGEASAARVGNYLPGHLNLLASLSGGHGNSGRRDDEHH* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5354 255 MobiDBLite consensus disorder prediction 127 146 - -
Psa6g5354 255 Pfam TCP family transcription factor 30 215 IPR017887 -
Psa6g5354 255 MobiDBLite consensus disorder prediction 23 42 - -
Psa6g5354 255 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 252 - -
Psa6g5354 255 MobiDBLite consensus disorder prediction 24 42 - -
Psa6g5354 255 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 252 IPR005333 GO:0003700
Psa6g5354 255 ProSiteProfiles TCP domain profile. 30 84 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5354 Psa-Chr6 468612846 468615643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5354 5 253 TCP Transcription Factor Family AT5G23280 65.098 1.26e-96 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Psa6g5354 TCP 1.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5354 K16221 - gmx:100799005 312.768