Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5352 ATGTCTTCTGGCGGCGGCGACGGCGACGGCGGTGGCGGTAAGCTATTCTTCTGCCACAATTGCACTCAAAGAGTTACCTGTTCGGACGATTCCGAACCTTTCTGTCCAATCTGCTTCCAAGGTTTCATCGAAGAATGTACTCCCGATCCAAACCCTAACCCTAACGTCATTTTCCGTTTCAACCAAGACGATTCCGATAACGAATCCGATTTCCCTTTCCATCCATTCTCTCTTCTCCCTTTGTTGCTATCTTCTGCTTCCATTTCCAGGACCCGGCTCGAAACGACGGAAACCACCGAAACGGAAACCGATAACTTCGACCCGTTCACTTTCCTTCAGAATCACCTTAATGGACTTCATGCCGATGGTGCAAACATTCAGTTCGAGATCAATCATCCTTCTGAATCCGAATCAGGGTTTCGCGTTCCGTCTAACATGGGGGATTACTTCCTCGGTCCTGGTCTTGAGCAATTGATTCAGCAGCTTGCTGAGAATGATCCTAACCGTTATGGGACTCCGCCGGCATCGAAAGACGCTGTTCAGAATCTTCCGAGTGTCACTGTTGATGATGAGTTGATGAACTCGGAGATGAACCAGTGTGCTGTTTGTCAGGATGAGTTTGAGAAGGGTTTGCAAGTGAAGCAAATGCCTTGTAAGCATGTGTATCATGATGATTGCTTGCTTCCATGGCTTCAATTGCATAACTCTTGCCCTGTTTGTCGATATGAATTGCCTACTGATGATGCTGATTATGAGAACCTGGATAGGAGTGGTGGTGGTGGTGGTGGTGATGGGTTGAGGTCTGTTGTTGATGGTAACAGTGCTGGTGGTGCAGGTGGAGGAGGAGGAAATAGACCTGTCCACAGGACTTTTAGAATATCTTTGCGGTATCCTTTTGGTTCTGGTAACTCTGCTCAGGACTCTGATGGAAGGGGATTGGGAAATAGGCAAGAAGATTTGGATTGA 966 0.4762 MSSGGGDGDGGGGKLFFCHNCTQRVTCSDDSEPFCPICFQGFIEECTPDPNPNPNVIFRFNQDDSDNESDFPFHPFSLLPLLLSSASISRTRLETTETTETETDNFDPFTFLQNHLNGLHADGANIQFEINHPSESESGFRVPSNMGDYFLGPGLEQLIQQLAENDPNRYGTPPASKDAVQNLPSVTVDDELMNSEMNQCAVCQDEFEKGLQVKQMPCKHVYHDDCLLPWLQLHNSCPVCRYELPTDDADYENLDRSGGGGGGDGLRSVVDGNSAGGAGGGGGNRPVHRTFRISLRYPFGSGNSAQDSDGRGLGNRQEDLD* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5352 321 MobiDBLite consensus disorder prediction 299 321 - -
Psa6g5352 321 CDD RING-H2_RNF126_like 199 241 - -
Psa6g5352 321 Pfam Ring finger domain 198 241 IPR001841 -
Psa6g5352 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 304 - -
Psa6g5352 321 PANTHER OS06G0101300 PROTEIN 12 304 - -
Psa6g5352 321 SUPERFAMILY RING/U-box 179 247 - -
Psa6g5352 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 247 IPR013083 -
Psa6g5352 321 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Psa6g5352 321 SMART ring_2 200 240 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5352 Psa-Chr6 468392929 468397227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5352 144 256 C3H Transcription Factor Family AT5G01980 47.788 7.43e-32 122