Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5343 ATGGAGAACGACACCACCAACGCCACCACCACCACCGTCAACGCCACCGTCAACACGGCCAAACTAGGTTCAGGCGGCGGCGGCGGAGGAGTCAAATCCAACAACCATATCCACGAAGAAGAACATTCTAATTTGAACGGCGAGGAAAACATACCAGAAAAAATGGAAGAGAAAGAAGAAGAAGACGAAGACAAAGGGGAACAACAACAACCTACTGGATCTGAAACCGCCGCTCAACAACCTTCCAGAACGCCTTTCACTAATCTCAGCCAAGTCGATGCTGACCTCGCCCTCGCTCGAACCCTTCAAGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGATGGAAGTGACTATGGAAGTTGGGAGGGTGAGAGTTATTTGCATGATGATGGAGATGATTTTGATGATCTTCATGATGGCACTGATGTAGATGAGGATGATGATGATGGTGATGAGGATGAGGATGACGATAATGAGGAGGGATATGAAGATGAAGATGTATTTGATGTTCATGCTCATGCTAGTGCTGGAGAACATGATAACCCCACCATTGAATTTGATCCCGAGCTGTTTTCAAGTGATGAAGCCTATGCAAGAGCATTACAGGGGGCTGAAGAGAGGGATATGGCAGCTAGACTGTTGGCACTTGCTGGGATACATGATCAGGATGCTGAGGACATGGAGGAGCATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCATATGAGGAACTCCTGGCATTGAGTGAGGTAGTAGGAACTGAGAGCAGAGGCCTTTCGACTGATACTATTGCCTGTTTACCTTCAATCAACTATAAGACGGGGAGTGATCAGCATGGGAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGATGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAACTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACAGAGGTCTCTGCTTCTGGAAGCAACTTGTAA 1038 0.4663 MENDTTNATTTTVNATVNTAKLGSGGGGGGVKSNNHIHEEEHSNLNGEENIPEKMEEKEEEDEDKGEQQQPTGSETAAQQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGESYLHDDGDDFDDLHDGTDVDEDDDDGDEDEDDDNEEGYEDEDVFDVHAHASAGEHDNPTIEFDPELFSSDEAYARALQGAEERDMAARLLALAGIHDQDAEDMEEHGANSQDAWEDVDPDELSYEELLALSEVVGTESRGLSTDTIACLPSINYKTGSDQHGSNDSCVICRVDYEDDESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5343 345 MobiDBLite consensus disorder prediction 138 165 - -
Psa6g5343 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 341 IPR013083 -
Psa6g5343 345 MobiDBLite consensus disorder prediction 118 165 - -
Psa6g5343 345 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Psa6g5343 345 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 38 343 - -
Psa6g5343 345 SMART ring_2 294 334 IPR001841 -
Psa6g5343 345 Pfam Ring finger domain 292 334 IPR001841 -
Psa6g5343 345 MobiDBLite consensus disorder prediction 70 91 - -
Psa6g5343 345 SUPERFAMILY RING/U-box 285 339 - -
Psa6g5343 345 MobiDBLite consensus disorder prediction 1 21 - -
Psa6g5343 345 CDD RING-H2_PA-TM-RING 294 334 - -
Psa6g5343 345 MobiDBLite consensus disorder prediction 1 91 - -
Psa6g5343 345 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 38 343 IPR043312 -
Psa6g5343 345 MobiDBLite consensus disorder prediction 34 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5343 Psa-Chr6 467678295 467684605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5343 82 238 C3H Transcription Factor Family AT3G19910 50.000 1.25e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5343 K19045 - gmx:100787418 479.559