Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5339 ATGAAGCAAAGGGTTGAAACCAACATAACCAAGGAAGAGGAGGTTGAGTTCTCTAAGTATGTGCTTAAAGGACTTCTTCCGTATTTAAGACAGTTGGATGAAGAACAAATTATTGAGAAGGAAAGGGAAGCGAAGAGACAAGGGCTCTCATTCTCAAAGCTTGAAGTAAAAGAGGGAGACTATTTTAAAGATGAGCGTGTGTACTGTGACAACTGCAAAACGTCAATATTTGACTACCATAGAAGTTGTACAAAATGCCCTTTTGACATTTGTCTCCTTTGTTGCCGGGAGCTTCGTGATGGGAAGCTTCTCGGTGGTGCAGATCCAATTGAGTTTGATTTTATCTTCAGAGGGCCTAATTATCTGCATGGTGGAAATGAAGAGAGAATTGTCAGAGAAAATAAACCTTGTGATGCCGCCGAGCCTGAGATTCGTGAGTGGTCAAGATCTAGATGGCATGCGAATGGTGATGGTAGCATTCCCTGTCCAAAAGCCGATAATGAATGTGATCATGGTTTCCTGGAACTGAGAAGGATACTTCCTCTAAATTGCATCTCTGAGTTAGTATGTAAAGCTGAAGAACTTGCAGAAAAATTTAAGCTTCACGTTGTTCACCTTGCAGAGGAGACTCTTGATGATAGGTGTTCGTGTTGGAAGTCTGTTAGGAGCGCAGATGGTATCTACAGTAACCTAAGGAAAGCAGCTTTTCGTAAAGATTCCATTGACAACTTTTTGTACTGTCCTAGGGCTGTAGGTCTACATCAGGAAGATTTAAGGCATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTGTGAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAGCCACTAGTCATGTGGCGTGCATTTCGTCAAATAACCAATTCCAAGTTCGATGTACTTTTAGATGTGAAGACAATTAATTGCTTAGATTGGTGTGAGGGAGATATTAATATCCACCAGTTCTTTACTGGGTACACAAAGGGTCGCAAGGATTGGCTTAATTGGCCTGAGATGTTGAAATTGAAAGATTGGCCTCCTTTTGATTTATTTCAGGAACTTTTACCCCGTCATCATGCTGAGTTCATATCTTCCTTGCCTTTTAAAGAGTATACAGATCCTTTTAAGGGGGCTCTCAACCTTTATGTGAAATTGCCGGATTATTGTGTAAAGCCAGACATGGGGCCAAGAACATATGTTGCTTATGGATTTGCTCAGGAGCTTGGACGTGGTGATTCCGTGACTAAGCTCCACTGTGATGTGTCTGATGCTGTAAATGTGTTGACTCATATTGCTAAAGTGGAGCTGAAACCTGAGGAAGCTACAGCCATTGAGAGGTTGACACGCAAGCACCTCGAGCAAGATAAGAGGGAGCTACATGGTGATGAGAAAGTAACACTGAAACAAAAAAACAGTTCGATGGTTGGAGAGGATTCTTTAGATGGCGCTCTCTGGGACATTTTTCGGAGAGAGGATGCACCCAAATTGCAGGAATATCTAAAGAAGCATTTCAGAGAGTTCAGACATGTCCACTGCGATCCTTTAAAGCAGGTTATTCACCCTATTCATGATCAGACCATTTATCTGACTACGGAGCATAAGATGAAACTTAAGGAGGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAAGCTAGGAGATGCTGTTTTAATTCCTGCTGGTTTACCTCACCAAGTTAGAAATCTGAAGTCATGCTTCAAGGTTGCACTTGATTTTGTCTCTCCTGAACATGTTGGCGAGTGCATCCGTTTGACAGAGGAATTTCGCAAGCTTCCGATAAATCACAAAGCCTCCGAGGACAAGTTTGAGGTGAAGAAAATTATCATCCATGCTATGCGTGATGTGGTTGAAAAATTAGAGAACGCAAGGTCTAGGTAA 1911 0.4207 MKQRVETNITKEEEVEFSKYVLKGLLPYLRQLDEEQIIEKEREAKRQGLSFSKLEVKEGDYFKDERVYCDNCKTSIFDYHRSCTKCPFDICLLCCRELRDGKLLGGADPIEFDFIFRGPNYLHGGNEERIVRENKPCDAAEPEIREWSRSRWHANGDGSIPCPKADNECDHGFLELRRILPLNCISELVCKAEELAEKFKLHVVHLAEETLDDRCSCWKSVRSADGIYSNLRKAAFRKDSIDNFLYCPRAVGLHQEDLRHFQWHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQITNSKFDVLLDVKTINCLDWCEGDINIHQFFTGYTKGRKDWLNWPEMLKLKDWPPFDLFQELLPRHHAEFISSLPFKEYTDPFKGALNLYVKLPDYCVKPDMGPRTYVAYGFAQELGRGDSVTKLHCDVSDAVNVLTHIAKVELKPEEATAIERLTRKHLEQDKRELHGDEKVTLKQKNSSMVGEDSLDGALWDIFRREDAPKLQEYLKKHFREFRHVHCDPLKQVIHPIHDQTIYLTTEHKMKLKEEYGIEPWTFVQKLGDAVLIPAGLPHQVRNLKSCFKVALDFVSPEHVGECIRLTEEFRKLPINHKASEDKFEVKKIIIHAMRDVVEKLENARSR* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5339 636 SMART cupin_9 359 600 IPR003347 -
Psa6g5339 636 ProSiteProfiles JmjC domain profile. 378 600 IPR003347 -
Psa6g5339 636 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 7 632 IPR045109 GO:0032454|GO:0033169
Psa6g5339 636 Pfam JmjC domain, hydroxylase 486 583 IPR003347 -
Psa6g5339 636 SUPERFAMILY Clavaminate synthase-like 255 630 - -
Psa6g5339 636 Gene3D Cupin 247 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5339 Psa-Chr6 467492864 467499350 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Psa6g5339 JmjC 2.1e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5339 K15601 - mnt:21406437 771.541