Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5336 ATGCAATCAATTAGAAAATCCTTCAAATCTTTGGCTTCTTATAACAAAAAACTTTCTAGAAACTTCCCAGATTCCGACTCCGACGACCGTGAACATATCCCTATTCTTCTTAATCAAGAGCAGCGCCGCCGCCCAAGCAGCAGCAGCAGCGAGTATTATTCTATGGCCGGAGACGTCGTCGTTAAGATCGACGACGGTGGTGAGCCTGTTCCGGACCAAAAGATTTGGAGAGAGTCCAGCTATGATTTCTGGAATGATACCGGGGACAATGGGGAGGAGAGTTTTGATTTTAGGAATAAAGGTCACCAGCTGCAGCAAAAACCGGAGGATCCTCCGTCGCAGCTCATCGGTAGGTTTCTTCATAAACAGAAAGTTTCCGGCGAGATGTCGCTGGATATGGATTTGGAAATGGAGGAGCTACAGAATGACGAGGATGGAGACGGAAAGTTGACGCCGGTGGAAGAGTCTCCGACGGTGATACAACGGGAGCTTAAGGTGTCGTTTGAGGAACCTGCTTTTAGTAATGCGGTGGAAACACCGGCGTCAGCACATGCTTTTAATAATGTTATCGAAGGGGTAAATGACCCTGTTCGGAGGAGACACAGCAAGGATTCGCCGTTAATGGGTGATTGTTCTAGACCTCCGTTTCCACCGAATCATGATCGTCGTCGTTCTCGTTCACCGGCAGATGGTGATTGTGAGGTCTTGAGGTGTACCTCTAACGCTTCTTTTGAGAGGAACCTTTCCATGCAGAGAAAATCAGCTTTGTTGAAAACCAAAACTAAGTCTAGATTAATGGACCCGTCGCCGGATGAACAACCTGATAGAAGATCGGGTCGGGTTGCTAAATCAGGTCAACTTTTGTCGGGATTTCTCGGGAAGAAAGGGGATGAAGAAGAGGATGATCCTTTTATGGAAGAAGATTTTCCGGATGAGTATAAGAAAACACAATTTAGTTTTTGGATTCTTCTTGAATGGTTGAGCTTGATTTTGATCATCGGAGCTTTAGTAACGACTTTGAGTGTTCCGTTATTGAGGAATAAGAATCTGTGGCAGCTTAAGCTGTGGAAATGGGAGGTTATGATTCTTATTCTAATTTGTGGTAGGTTGGTTTCGGATTGGTTTATTAGAATCGCTGTTTTTTGCATCGAAAGAAATTTTTTATTGAGAAAAAGAGTTCTTTATTTTGTGTATGGTGTGAAGAAAGCTGTGCAAAATTGTGTCTGGTTAGGACTTGTTTTGATTGCATGGCACTTTCTCTTTGATAAGAGAGTTCAAAGAGAGACAAAAGGGGTTTTTCTTCAATATGTTACGAAAGTTTTGGTGTGTTTCTTGGTGGGTACTTTGGTGTGGTTGTTAAAAACTCTAGTAGTTAAGGTTTTAGCTTCTTCTTTTCATGTGAGCACGTACTTTGATAGGATTCAAGAGTCACTGTTTAATCAATTTGTGATTGAAACACTCTCGGGGCCACCTTTGGTGGAAATTCGAAGGGCCGAAGAGGAAGAGGAAAGACTTGCTGACGAGGTTCAGAAGTTGCAAAATGCTGGTGCAAACATACCGGCTGATCTTAGAGCTACTGCGTTTCCTTCTAACAGAAGTGGAAGGTTGAGGAGTGGACTGCTGCAGAAAAGTCCCGCCAAAAGTGGAAAGTTTTCGATGCCACTTTCTAAGAAGTCTGATGATGGTGGGATTGGGAATGGTGGTGGAATTACTATTGATCACTTGCATAAGTTGAATCCAAATAATGTGTCTGCTTGGAATATGAAGCGGTTAATGAATATGGTTCGCCATGGAGTACTTACTACATTGGATGAACAAATACTTGATTCCACTCCCGACGATGAGCATGCCACACAAATCAGAAGTGAGAATGAGGCTAAAGCAGCTGCTAAGAAAATCTTTCAGAACGTTGCTAGGCGCGGCTGCAGGTTTATATACCCCGAGGATTTGATTCGTTTTATGCGAGAAGATGAAACAGTAAAAACTTTAAATCTCTTTGAAGGAGCATCTGATTCTGGAAAAATCAGCAAATCCGCTTTGAAGAACTGGGTGGTGAATGCGTTCAGGGAGAGGAGAGCCCTTGCTTTGACATTGAACGACACCAAAACGGCGGTGAACAAACTTCACCGAATGCTCAATTTTTTAGTTGCCATTGTCATTCTGGTTATTTGGCTCTTGATATTGGAAATCGCCACCACCAAATTTCTTCTTTTTGTGAGCTCACAACTTGTCTTGGTTGCATTTATATTCGGTAACACCTGCAAGACCGTCTTTGAAGCAATCATATTTTTATTTGTTATGCATCCATTTGATGTGGGAGATAGATGTGAAATTGACACGGTCCAGATGGTTGTAGAAGAAATGAACATATTGACTACGGTATTTTTAAGATACGATAATCTAAAGATAACGATCCCTAATAGTGTCCTTGCTACTAAGGCTATACAAAATTTCTACCGTAGTCCTGATATGGGAGATGCGATTGAATTCTGTATCCATATAGCTACTCCGCTTGAAAAGATTTCACTTATGAAACATAGAATACATAGTTACGTCGATAATAAGAAGGAGCACTGGTATCCTTCACCTTTTATAGTCTTGAAAGATCACGAGCAATTGAACATGGTGAGAGTGGCGATCTGGCCAACTCATAGAATGAACTTCCAAGACATGGGAGAAAGATTTATCAGAAGATCTATCCTGATTGAAGAGTTAATGAAGATTTTCAGAGATCTCGACATTCAATACCGTCTCATGCCTGTCGACATCAACGTTAGAGCTATGCCTACAACCTCCGATCGTGTTCCAGCTAGTTGGTCAATGGTCACAAATTGA 2835 0.4208 MQSIRKSFKSLASYNKKLSRNFPDSDSDDREHIPILLNQEQRRRPSSSSSEYYSMAGDVVVKIDDGGEPVPDQKIWRESSYDFWNDTGDNGEESFDFRNKGHQLQQKPEDPPSQLIGRFLHKQKVSGEMSLDMDLEMEELQNDEDGDGKLTPVEESPTVIQRELKVSFEEPAFSNAVETPASAHAFNNVIEGVNDPVRRRHSKDSPLMGDCSRPPFPPNHDRRRSRSPADGDCEVLRCTSNASFERNLSMQRKSALLKTKTKSRLMDPSPDEQPDRRSGRVAKSGQLLSGFLGKKGDEEEDDPFMEEDFPDEYKKTQFSFWILLEWLSLILIIGALVTTLSVPLLRNKNLWQLKLWKWEVMILILICGRLVSDWFIRIAVFCIERNFLLRKRVLYFVYGVKKAVQNCVWLGLVLIAWHFLFDKRVQRETKGVFLQYVTKVLVCFLVGTLVWLLKTLVVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVEIRRAEEEEERLADEVQKLQNAGANIPADLRATAFPSNRSGRLRSGLLQKSPAKSGKFSMPLSKKSDDGGIGNGGGITIDHLHKLNPNNVSAWNMKRLMNMVRHGVLTTLDEQILDSTPDDEHATQIRSENEAKAAAKKIFQNVARRGCRFIYPEDLIRFMREDETVKTLNLFEGASDSGKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIVILVIWLLILEIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDTVQMVVEEMNILTTVFLRYDNLKITIPNSVLATKAIQNFYRSPDMGDAIEFCIHIATPLEKISLMKHRIHSYVDNKKEHWYPSPFIVLKDHEQLNMVRVAIWPTHRMNFQDMGERFIRRSILIEELMKIFRDLDIQYRLMPVDINVRAMPTTSDRVPASWSMVTN* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5336 944 SUPERFAMILY Sm-like ribonucleoproteins 759 818 IPR010920 -
Psa6g5336 944 MobiDBLite consensus disorder prediction 194 230 - -
Psa6g5336 944 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 941 IPR016688 -
Psa6g5336 944 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 941 - -
Psa6g5336 944 MobiDBLite consensus disorder prediction 264 279 - -
Psa6g5336 944 MobiDBLite consensus disorder prediction 257 282 - -
Psa6g5336 944 MobiDBLite consensus disorder prediction 21 38 - -
Psa6g5336 944 PIRSF Memb_At2g17000 40 943 IPR016688 -
Psa6g5336 944 Gene3D - 769 818 IPR023408 -
Psa6g5336 944 MobiDBLite consensus disorder prediction 216 230 - -
Psa6g5336 944 Coils Coil 495 518 - -
Psa6g5336 944 Pfam Mechanosensitive ion channel 711 914 IPR006685 GO:0016020|GO:0055085
Psa6g5336 944 MobiDBLite consensus disorder prediction 19 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5336 Psa-Chr6 467349428 467354046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5336 58 940 Mechanosensitive Ion Channel Family AT1G78610 56.667 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5336 K22048 - gmx:102665658 1325.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5336 6 467349428 467354046 Psa6g5336 6 467349428 467354046 ECH