Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5334 ATGTTGATGGTGGCGAAGGAAGACAACGAAAGCTGCGGCAGCGGAGTGCATCGCCGCACATCATCCACGTCATCGAATCCGTCGTATAGTCGGCACCATCGGCAGAAAGTTGAAGTGTACGAGGAGATTCTCCGCCGGCTTAATGATTCCGGCAACGAAGAAACTTTACACCCTGGATTTAACGATCAGCTTTGGGCTCACTTCAACCGTCTTCCTACACGGTATGCGTTAGATGTGAATGTAGAAAGGGCAGAAGATGTTCTTATGCACAAGAGATTACTTCATTTAGCACATGATCCTGCTAATAGGCCTTCAATTGAAGTTCACTTAGTCCAGCTTCATCCCTCATGTGATGGAAACTCAGCTGACTCTTTCCAATCATATGCTCCCGGCGTAGATTCTGGTCAAAGCTCTCCTAAGTATTCAAACAGGCAGGGTGTACTCCCACCTCCTGCTTTTGGCTCTTCTCCTAATCTTGAAGCACTGGCTCTTGAAGAAAATGACTCTGAAGACTTAGAAGAGGAACGGTTTGTACATGCAAGTGTACAATATTCACGGCCCATGCATGAAATCACTATCTCAACAGATGACAAGCCAAAGCTTCTCAGCCAGTTGACTGCTTTGCTTGCTGAGGTTGGACTGAACATCCAAGAAGCACATGCTTTTTCCACAACTGATGGTTACTCATTAGATGTGTTTGTTGTTGAAGGCTGGCCCTATGAGGAAACAGAGAAGCTAAAAGCAACTTTGGAAGAAGAAGTCTTGAAGATTGAGAGACATGAGAGGTCCAGAGGGCAATCAATATCATCTGTTGATGAGTGTGATCAAGCAGGGATGAAGAATGAGCTGGATCATTTGACAATTCCAAATGATGGGACAGATGTTTGGGAAATAGATCCCAAACATTTGAAATATGGAACTCAAATTGCATCGGCGTCATACGGTCAACTATTTAAAGGTATATATTGTAGCCAGGAAGTAGCCATCAAAGTTCTCAAGACTGAGCATGTAAGTACAGAAATGCAGAAAGAGTTTGCTCAAGAAGTCTACATCATGAGGAAGGTTCGACACAAGAATGTTGTGCAATTCATGGGAGCATGTACTAAGCCCCCGGGCTTATGCATAGTTACAGAGTTTATGTCTGGTGGAAGTGTGTATGACTACCTACATAAGCATAAAGGGTGTTTTAAATTTCCTACCTTGCTCAAAGTCGCAATTGATGTTTCTAAAGGAATGAGCTACTTGCACCAACATAACATAATCCACAGAGACTTGAAATCTGCCAATCTTTTGATGGATGAAAATGGTGTTGTAAAGGTTGCCGATTTCGGAGTTGCTAGAGTAAAAGTTCAATCTGGAGTTATGACAGCGGAAACTGGGACTTATCGTTGGATGGCTCCTGAGGTTATTGAACACAAGCCGTATGATCACAAGGCTGATGTATTTAGTTTTGGAATTGTTTTATGGGAGTTGCTCACTGGAAAGCTTCCATACGAATATTTGACCCCTCTACAGGCAGCCATAGGAGTTGTTCAGAAGGGTAAACGGCCCACCATCCCCAAGAGTGCTCATCCAAAGTTTGTTCAGATTCTCGAGAGATCTTGGGAGCAAGATCCAACATTAAGACCCGATTTCTCTGAAATCATTGAGCTCTTGCAGCAGTTAGCTAAGGAGGTTGGAGATGAAGGAGAGGACCGGCGCCGGGGTAATTCGGCAGGATTTCTGTCTGTCCTCAGACGAGGTCATCACTAA 1752 0.4412 MLMVAKEDNESCGSGVHRRTSSTSSNPSYSRHHRQKVEVYEEILRRLNDSGNEETLHPGFNDQLWAHFNRLPTRYALDVNVERAEDVLMHKRLLHLAHDPANRPSIEVHLVQLHPSCDGNSADSFQSYAPGVDSGQSSPKYSNRQGVLPPPAFGSSPNLEALALEENDSEDLEEERFVHASVQYSRPMHEITISTDDKPKLLSQLTALLAEVGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETEKLKATLEEEVLKIERHERSRGQSISSVDECDQAGMKNELDHLTIPNDGTDVWEIDPKHLKYGTQIASASYGQLFKGIYCSQEVAIKVLKTEHVSTEMQKEFAQEVYIMRKVRHKNVVQFMGACTKPPGLCIVTEFMSGGSVYDYLHKHKGCFKFPTLLKVAIDVSKGMSYLHQHNIIHRDLKSANLLMDENGVVKVADFGVARVKVQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGKRPTIPKSAHPKFVQILERSWEQDPTLRPDFSEIIELLQQLAKEVGDEGEDRRRGNSAGFLSVLRRGHH* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5334 583 Pfam Protein tyrosine and serine/threonine kinase 303 552 IPR001245 GO:0004672|GO:0006468
Psa6g5334 583 SMART serkin_6 303 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5334 583 SUPERFAMILY ACT-like 188 252 IPR045865 -
Psa6g5334 583 MobiDBLite consensus disorder prediction 15 30 - -
Psa6g5334 583 CDD STKc_MAP3K-like 309 552 - -
Psa6g5334 583 ProSiteProfiles Protein kinase domain profile. 303 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5334 583 Gene3D Phosphorylase Kinase; domain 1 293 381 - -
Psa6g5334 583 Gene3D - 187 261 - -
Psa6g5334 583 Coils Coil 240 263 - -
Psa6g5334 583 ProSiteProfiles ACT domain profile. 190 265 IPR002912 -
Psa6g5334 583 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 20 566 - -
Psa6g5334 583 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 20 566 - -
Psa6g5334 583 Gene3D Transferase(Phosphotransferase) domain 1 382 571 - -
Psa6g5334 583 PRINTS Tyrosine kinase catalytic domain signature 377 390 IPR001245 GO:0004672|GO:0006468
Psa6g5334 583 PRINTS Tyrosine kinase catalytic domain signature 414 432 IPR001245 GO:0004672|GO:0006468
Psa6g5334 583 PRINTS Tyrosine kinase catalytic domain signature 460 470 IPR001245 GO:0004672|GO:0006468
Psa6g5334 583 PRINTS Tyrosine kinase catalytic domain signature 479 501 IPR001245 GO:0004672|GO:0006468
Psa6g5334 583 PRINTS Tyrosine kinase catalytic domain signature 523 545 IPR001245 GO:0004672|GO:0006468
Psa6g5334 583 SUPERFAMILY Protein kinase-like (PK-like) 294 555 IPR011009 -
Psa6g5334 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Psa6g5334 583 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5334 Psa-Chr6 467244984 467251512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5334 2 582 MAP Kinase Kinase Kinase AT4G35780 62.264 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Psa6g5334 PK_Tyr_Ser-Thr 3.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5334 - - gmx:100805180 956.822