Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5325 ATGGTACTATTGAAGTGTGACATGAACAATTTCATCATGCAAAACTTTAGTGAGAGATTAAGACCTCTTGTTGGTTTGAATGGTTGGGACTATTGTGTTTACTGGAAATTAAGTGAAGATCAAAGGTTTCTTGAATGGTTGGGATGTTGTTGTGGTGGAAGTGAAAGCAATCAAAACTGCGGCGGAGAAGAACATATTTTCGCTATCTCTTCTTGTAGGGATACAATGTTTTCGCATCCAAGAACAAACTCTTGTGATCTTCTTTCACAACTTAACACTTCCATTACTACCGATTCAGGGATTCATGCACAAACTCTATTAACAAATCAACCTAGCTGGTTGAACTATCCTAACACCTTGGATCCAAACACTTTACAAGAAACAATTAATGGGACACATGTTTTGATTCCAGTGCCTGGTGGACTAGTTGAGCTCTTTGTAACTAAACAAGTTGGTGAAGATCAGCAGGTGATAGATTTCATCACATCTCAATGCATTGTCATGGTTGATCAAGAAGGGATGATGAACAACTCAATTGGGTTCAATTCAATGAGCAACATGCAATCGAATCAAGTTATAGTGGACGAAATCGATGGAGATAAAACAAACAATCATTTTCATCCATCAGAGCCATTGAATCTTCAGCACGACATGTCTGTGATGAACTTCATGCAACAGTTCAATTACAATTACAATTACAATCAGCAACAAAACCGAATCAAAAACGACGAAACAACGTTTTCCGAAGAATACCACGGCTCGTTCCTTCATGATCAAGAAAACAACAACAACAACAATAACAGCAGCATTCTCAAATCCAACACAGAAGAGGAACATGATAACAAAAGCTTGATGACAGATAATAATCAGTATATGTTTGTTGATCCATTAGACTCGAAAAGAAAACACGAACAAGTTGTTGGTAGATCGGATTCCATGTCGGATTGCAGTGATCAGAATGAAGAAGAGGAAGACGGGAAATTCAGAAGAAGAAACGGAAAAGGAAACCAATCAAAGAACCTTGTCGCGGAGAGAAAAAGAAGGAAGAAACTGAATGATAGGTTATATAACCTTCGCTCGTTGGTTCCGAGAATCTCAAAGCTCGATAGAGCTTCAATTCTCGGTGATGCTATTGAGTTTGTGAAGGATTTGCAGAAGCAAGTGAAAGAGCTTCAAGATGAACTTGAGGAAAATTCAGACACAGGAACTGAAAGTAACTGCATTGTTAATGGAAATAATAATCAATACATTGGTGGTGTTCAAGCTCAACTAGATAATAACAATAATAATAACAGTAATGTTCCAAAAGAAGAACATGGCTTTCATGTTGGAAATGGCTATGTTTCAAAACAAAAGCATGAAGATGTAGGAACTGTTACTGACAAACAGACACAACAAATGGAGCCGCAAGTGGAAGTGGCGCGGATAGACGGGAATGAGTATTTTCTGAAGGTATTCTGTGAGCATAGGCCTGGTGGATTTGTAAGATTGATGGAAGCATTCAACACTTTAGGAATGGATGTAGTACATGCCACAGTAACCAGCCATAAGGGTCTTGTGTCAAATGTTTTCAAAGTGGAGAAAAAGGAGAGTGAAATAATTGAGGCTGAAGATGTAAGAGATTCATTGATAGAGCTGACAAGGAACAGATCTGCATGTTGGAGTGATGAGATGACAGCAACATCATCTGAGAATGGTGTTATCAGTAAGGACCAACATGATCACCAGATTAATGCTGCATATCATACACACCAATTTCATAGTTAA 1767 0.382 MVLLKCDMNNFIMQNFSERLRPLVGLNGWDYCVYWKLSEDQRFLEWLGCCCGGSESNQNCGGEEHIFAISSCRDTMFSHPRTNSCDLLSQLNTSITTDSGIHAQTLLTNQPSWLNYPNTLDPNTLQETINGTHVLIPVPGGLVELFVTKQVGEDQQVIDFITSQCIVMVDQEGMMNNSIGFNSMSNMQSNQVIVDEIDGDKTNNHFHPSEPLNLQHDMSVMNFMQQFNYNYNYNQQQNRIKNDETTFSEEYHGSFLHDQENNNNNNNSSILKSNTEEEHDNKSLMTDNNQYMFVDPLDSKRKHEQVVGRSDSMSDCSDQNEEEEDGKFRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGTESNCIVNGNNNQYIGGVQAQLDNNNNNNSNVPKEEHGFHVGNGYVSKQKHEDVGTVTDKQTQQMEPQVEVARIDGNEYFLKVFCEHRPGGFVRLMEAFNTLGMDVVHATVTSHKGLVSNVFKVEKKESEIIEAEDVRDSLIELTRNRSACWSDEMTATSSENGVISKDQHDHQINAAYHTHQFHS* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5325 588 Gene3D - 325 400 IPR036638 GO:0046983
Psa6g5325 588 SMART finulus 341 390 IPR011598 GO:0046983
Psa6g5325 588 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Psa6g5325 588 SUPERFAMILY ACT-like 479 544 IPR045865 -
Psa6g5325 588 Coils Coil 374 401 - -
Psa6g5325 588 Pfam Helix-loop-helix DNA-binding domain 342 385 IPR011598 GO:0046983
Psa6g5325 588 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 18 163 IPR025610 -
Psa6g5325 588 CDD bHLH_AtAMS_like 338 408 - -
Psa6g5325 588 MobiDBLite consensus disorder prediction 300 346 - -
Psa6g5325 588 ProSiteProfiles ACT domain profile. 482 557 IPR002912 -
Psa6g5325 588 Coils Coil 526 546 - -
Psa6g5325 588 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 398 IPR036638 GO:0046983
Psa6g5325 588 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 102 554 - -
Psa6g5325 588 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 102 554 - -
Psa6g5325 588 CDD ACT_UUR-ACR-like 483 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5325 Psa-Chr6 466624782 466628336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5325 13 563 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 46.454 1.83e-147 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g5325 bHLH-MYC_N 8.1e-20 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5325 - - aprc:113871920 733.406