Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5320 ATGATGGAATTTGATGAGTATGAATATTTAGAGAGAACAGTTGATGATGCTGAGCTTAAGAACAAGAATCTAATTTCTAATTTTGGGGAAAAGACTGTGAAATATGATGATAGAGTACGTAGTAGAAGCTCCAAGCATAAGGATAGTGAGAAGGATGATGATGCTCATGGTGTTGATAATGGTGTCAAGCATTTAAAATCTGGAGATGGTTCTAGTGGTTATGATAGGCAGAAAGAGAGAGGCTCGTCTCGGCGTCGTTCTGGCAAAAGTATATCGGAAAGGAATCGAGGTGATATGGATAACAGAACCCGAGAAACAAGTCGTGATAGAGGAATGGGAAGGGACACAAAGGATTACAGAGACAAAGGAATCACAAGGGACACGAAGGAACCAGATAGAGAAAAGTTGGAAAGCAGACGGCATAAAGAGAAAAAGGAAGATGCAGCTGAACCTGAGACTGACCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATATCTCTTAAAGCGGATGAAAGAGATGTTTATGAGTTCTTTTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAAGGTGTTGGGTATATTGAGTTTTACGATGCTATGTCTGTTCCCATGGCAATAGCTCTTTCAGGTCAACCAATTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAATCTACAGCATCTGTTGCCAATGGACCTTCTGGAAATTTGGGTCCTTATTCTGGGGGTGCAAGAAGGCTATATGTTGGCAATCTGCATTCCAGTATTACTGAAGCTGATCTTCATAGGGTCTTTGAAGCATTTGGTCAAGTTGAGCTAGTCCAGCTGCCTCTTGATGACATTGGGCATTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGCCTAGAAGATGCAAAAAATGCTCAGAGCTTGAATAGCCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCAGCTGTTACTGATCAGTCTGGAATGCAAGAATTCGGTGGAAATACTGGTGATATTGATGATGATGAAGGTGGTGGCTTGTCCTTGAATGCCTCGTCCCGAGCATTACTCATGCAGAGGTTGGATCGCAGTGGCACTGCATCAAGTATGGCTGGTTTTCTGGGCAGTTCTGTTGTCAACAATACAGGCCTTAATCTACACGCAACAGGAAACATACCACCAGTAGCTGGACTACCAGGTGGAGGTCTTCAAATTCCAATGCTCACAAGTCCTTCTATTGATACAATTGGCGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCGGAAAATGAGAAGGAGCCGGACTTTGATTTGGATGTTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGGAACTTAAAACATATATACGTTGATAAGAAGAGTGCTGGGTTTGTGTACTTACGATTTGAAGGTACTCAATCTGCTATAGGTGCACAGCGGGCCTTACATGGAAGATGGTTTGCTGGAAAGATGATCACTGCAAGCTTTATGGTGCCGCAGTCATACGAGGATAGATTCCCGGACAGCAAGTAA 1596 0.4273 MMEFDEYEYLERTVDDAELKNKNLISNFGEKTVKYDDRVRSRSSKHKDSEKDDDAHGVDNGVKHLKSGDGSSGYDRQKERGSSRRRSGKSISERNRGDMDNRTRETSRDRGMGRDTKDYRDKGITRDTKEPDREKLESRRHKEKKEDAAEPETDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPILGQPVMVKPSEAEKNLVQSTASVANGPSGNLGPYSGGARRLYVGNLHSSITEADLHRVFEAFGQVELVQLPLDDIGHCKGFGFVQFARLEDAKNAQSLNSQLEIGGRTIKVSAVTDQSGMQEFGGNTGDIDDDEGGGLSLNASSRALLMQRLDRSGTASSMAGFLGSSVVNNTGLNLHATGNIPPVAGLPGGGLQIPMLTSPSIDTIGVPSECLLLKNMFDPENEKEPDFDLDVKEDVEAECSKFGNLKHIYVDKKSAGFVYLRFEGTQSAIGAQRALHGRWFAGKMITASFMVPQSYEDRFPDSK* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5320 531 CDD RRM1_RBM39_like 161 233 - -
Psa6g5320 531 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 229 IPR000504 GO:0003723
Psa6g5320 531 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 335 IPR000504 GO:0003723
Psa6g5320 531 SMART rrm2_1 438 516 IPR003954 GO:0003676
Psa6g5320 531 SMART rrm2_1 265 337 IPR003954 GO:0003676
Psa6g5320 531 Gene3D - 432 531 IPR012677 -
Psa6g5320 531 TIGRFAM SF-CC1: splicing factor, CC1-like family 43 529 IPR006509 GO:0003723|GO:0005634|GO:0006397
Psa6g5320 531 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 356 455 IPR029123 -
Psa6g5320 531 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 341 IPR000504 GO:0003723
Psa6g5320 531 PANTHER CC1-LIKE SPLICING FACTOR 2 132 - -
Psa6g5320 531 PANTHER CC1-LIKE SPLICING FACTOR 128 527 - -
Psa6g5320 531 Gene3D - 261 368 IPR012677 -
Psa6g5320 531 Gene3D - 122 260 IPR012677 -
Psa6g5320 531 Coils Coil 7 27 - -
Psa6g5320 531 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 237 IPR000504 GO:0003723
Psa6g5320 531 SUPERFAMILY RNA-binding domain, RBD 264 524 IPR035979 GO:0003676
Psa6g5320 531 CDD RRM3_RBM39_like 436 518 - -
Psa6g5320 531 SUPERFAMILY RNA-binding domain, RBD 154 262 IPR035979 GO:0003676
Psa6g5320 531 MobiDBLite consensus disorder prediction 32 158 - -
Psa6g5320 531 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 132 - -
Psa6g5320 531 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 128 527 - -
Psa6g5320 531 SMART rrm1_1 438 516 IPR000504 GO:0003723
Psa6g5320 531 SMART rrm1_1 161 233 IPR000504 GO:0003723
Psa6g5320 531 SMART rrm1_1 265 337 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5320 Psa-Chr6 466406870 466418101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5320 161 327 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 3.80e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5320 K13091 - gmx:100789839 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5320 6 466406870 466418101 Psa6g5320 6 466406870 466418101 ECH