Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5305 ATGAGTAGTAGCTGTGGAAGAGAAGGTGTAGGAGGAGCAGTGAGACAGTATATAAGATCAAAAGTCCCTCGTTTGAGATGGACTCCTGAACTTCACCGTTGCTTCGTTACGGCCATTCATACCCTTGGAGGCCATCATAAGGCTACTCCTAAACTTGTTCTTCAGCTTATGGATGTAAAAGGTCTCACCATTTCACATGTCAAAAGCCATCTCCAGATGTACAGAAGTATGAGAGGTGAAATGGGAAGACAAGGTAGAACAAGTTCACAACATAGAAACCAATGCTTTGAAGATCATGACGATGGATGTGTTGATGAAGTGAATGAGCATTCATGTTCAAAACTCATAAGAGAAGAATCTGATTCCTTCCTTGGCAACAGCAATATCTTCTCTAAAAGAGCTCGAATCGAGAGAAGTTCTACAACAATTAGTCTGGTGCAATGCAGCGAAAGAAGAAGAATATGTGATGATGATGATGATGGTGGTGCAGTAACAATAACAAATCCGTACCGCTTTTATGACCATGAACTGCTGCACAAGAAAAAAGGAATAAAAGAGGAAGAAAAGTTTTATGGATGGCAGAGAAAGATTCAACCACATTTTGGCATCACTTCTTTCAAATCTCCGAACCAACCATCTCATTTCTCTCAGGTTGGTAATGGGAATGAGAAAAGGAGGGGTTCATGGTCAATGAATGGAGTTATGAAAACTGACAAAGCACATGTAGAAGTTGAAAGTGAAGGAGGAGATGAGTTGTCATTGTCACTAACATTGCAAAATGGTTCAGCTCAGACAAGTAATGGTTGTTATTCGGCAAGTGAAATCAGTGAGGCAATTTCATGCTGGACAACTCCTCCTAAAGACTGCTATAGAACATCTAGTAGTGTTAAAGAAAAGATTAATTTAGACCTATCTTTAGCCATATGTGGTAATTGA 936 0.3974 MSSSCGREGVGGAVRQYIRSKVPRLRWTPELHRCFVTAIHTLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGEMGRQGRTSSQHRNQCFEDHDDGCVDEVNEHSCSKLIREESDSFLGNSNIFSKRARIERSSTTISLVQCSERRRICDDDDDGGAVTITNPYRFYDHELLHKKKGIKEEEKFYGWQRKIQPHFGITSFKSPNQPSHFSQVGNGNEKRRGSWSMNGVMKTDKAHVEVESEGGDELSLSLTLQNGSAQTSNGCYSASEISEAISCWTTPPKDCYRTSSSVKEKINLDLSLAICGN* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5305 311 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 311 - -
Psa6g5305 311 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 23 76 IPR006447 GO:0003677
Psa6g5305 311 Gene3D - 22 78 - -
Psa6g5305 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 79 IPR017930 -
Psa6g5305 311 Pfam Myb-like DNA-binding domain 25 75 IPR001005 -
Psa6g5305 311 SUPERFAMILY Homeodomain-like 21 77 IPR009057 -
Psa6g5305 311 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 311 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5305 Psa-Chr6 465590348 465593611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5305 5 78 G2-like Transcription Factor Family AT1G14600 75.000 3.28e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa6g5305 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5305 - - mtr:MTR_1g112370 416.001