Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5273 ATGCTTCTTCCTATGAGCTGCATTCTTTTAATATGTCTCTTGAGTTCTTTCTCAATCCAAATCAAAGCTACTAAAACTTTCTCCAATCTCACCTTACCCCACCAGCATCCTTACCCTGAAGCTGTGGTTCATGAACTTCAACAGAAAATCAATGTGTCACTTTTTAGAAGAGAGCTACTCGGAAAAACACAAGGCTCTTGTTTAACTGGAAACCCGGTGGATGATTGCTGGCGTTGCGACGCCAACTGGGCGGCGAATCGTCAGAAGTTAGCCGAATGCGGAATCGGATTCGGACGCGCTGCCATGGGAGGTAAAAACGGCCAGATCTACGTTGTCACAGACTCCTCCGACTCCGACCCGGTGAATCCCGTTCCCGGCACACTCCGTCACGCCGTTATACAAGATGAACCTCTCTGGATAATCTTCTCCGCCGACATGACAATAAACCTCCGCCACGAGCTTATCTTCAACAGCTTCAAAACCGTCGACGGCCGCGGTGCGAATGTTCAGATCACCGGTCACGGTTGCATCACGCTCCAATACATTTCAAATGTTATCATCCATAACATCCATGTTCATCACTGTAAGCCCTCCGGGAACACTAACATACGCGCGAGTCCAACGCATGTAGGGTTCCGAGGCATATCGGACGGTGACGGAATATCAATCTTCGGTTCTCGGAACATCTGGATCGACCATTGCTCCGCTAACCCTACCATCAACAGCCAGGGTAACCGTTACACCGCTCCCTCCGATCCAAACGCGAAAGAGGTAACGAAGCGCGTGGAGACCGATGATAAAGAGTGGAGTGGCTGGAATTGGAGGACGGAAGGGGACATAATGGTAAACGGAGCGTTCTTTGTGCCGTCCGGAGGCGGGATGAGTGCGCAGTACGCGCAGGCGTCGAGCGTGCAACCGAAATCCGCCGTGCAAATCAACCAGCTCACGATGTACGCCGGTGTATTCGGTGATCCAAGGGATAATGGAGACATATATCCCGGTTTCAACGGCGCCGGGACCACCACTGGAGCCGGGACCACCACGGGAGCCACCAGCAAGGGCTACAATGAGGGACCCAACAGTGACGGTGGAGACTTCTTTGGTATGATATTCAAAGGCAGTAGCAGCCAAGCAGCACCATTAGCACCCTACTCATCAATTGTATTTGTTTCAACTTTTTTGTCTCTTTTTATTGTTTTCAATTTGGACATTATCACCAACTATGATATTCTATTATCATTATTATGA 1248 0.4984 MLLPMSCILLICLLSSFSIQIKATKTFSNLTLPHQHPYPEAVVHELQQKINVSLFRRELLGKTQGSCLTGNPVDDCWRCDANWAANRQKLAECGIGFGRAAMGGKNGQIYVVTDSSDSDPVNPVPGTLRHAVIQDEPLWIIFSADMTINLRHELIFNSFKTVDGRGANVQITGHGCITLQYISNVIIHNIHVHHCKPSGNTNIRASPTHVGFRGISDGDGISIFGSRNIWIDHCSANPTINSQGNRYTAPSDPNAKEVTKRVETDDKEWSGWNWRTEGDIMVNGAFFVPSGGGMSAQYAQASSVQPKSAVQINQLTMYAGVFGDPRDNGDIYPGFNGAGTTTGAGTTTGATSKGYNEGPNSDGGDFFGMIFKGSSSQAAPLAPYSSIVFVSTFLSLFIVFNLDIITNYDILLSLL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5273 415 Pfam Pectate lyase 153 236 IPR002022 -
Psa6g5273 415 SMART amb_all 145 293 IPR002022 -
Psa6g5273 415 Gene3D - 237 323 IPR012334 -
Psa6g5273 415 Gene3D - 70 236 IPR012334 -
Psa6g5273 415 PANTHER PECTATE LYASE 235 339 - -
Psa6g5273 415 PANTHER PECTATE LYASE 6 235 - -
Psa6g5273 415 SUPERFAMILY Pectin lyase-like 71 236 IPR011050 -
Psa6g5273 415 PANTHER PECTATE LYASE 18-RELATED 6 235 IPR045032 GO:0030570
Psa6g5273 415 PANTHER PECTATE LYASE 18-RELATED 235 339 IPR045032 GO:0030570
Psa6g5273 415 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Psa6g5273 415 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Psa6g5273 415 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Psa6g5273 415 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Psa6g5273 415 SUPERFAMILY Pectin lyase-like 235 312 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5273 Psa-Chr6 464148905 464153660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5273 235 400 Polysaccharide Lyase AT3G53190 48.795 1.60e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5273 K01728 - gmx:100808438 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5273 6 464148905 464153660 Psa6g5273 6 464148905 464153660 ECH