Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5272 ATGGGAAAGAAACATTTGAAACTATCCTCACTTTTCAAAACCACACCAAGAAACCAACATCCATGGCAATTCTTACCTTCTTGTAACCACCATCCAAAGACTCTCTCCTTTCGAACTCCCGGTGGCGACGATGACATATTCAAAACAGTTAACTCCGTTTTCTTCGACCAAATCGAAACACCGAAGTCATGTTTCACAACAACCTCGTCTGGTTCCGCGAGCTTCTCGACAGAATCAGACGAGTATTATTGCTACAACGACGGAGAATTGTTGGAGACATTGGTACGAGGAGTTAAATCCGAGAGGTCTTCTGAGAGACTGTTTTTCGAAGCCGAAGACACGAGTTCGATCTTGGAAAAGGCGAAGGCGGACGGCTTTCCGTTTAAGGAAAGTGTTGTATTGGCTTTGGAGTCAGATGATCCTTATGAGGATTTCAAGAGATCAATGGAGGAGATGGTTGAGTCACATGGTGTGAAAGATTGGGAAGGTTTGGAAGAACTTTTGAGTTGGTATTTGAGAGTTAATGGGAAAAATAATCATGGGTTTATCGTTGGTGCTTTTGTTGATTTGTTGATTAGTTTAACAGGTTCTAATGATTCTAGTAACTCTTGTTCTGAATTAACTTTGTATTCTTCTGCGGTTTCTTCTTTTGCTTCTTCACCAACTTTGTATTTATCTGAGGGACAGAATGAGATTACTGAGATTGAAGATAATAATAATAATAATGTAACAGATTCTTAG 741 0.3981 MGKKHLKLSSLFKTTPRNQHPWQFLPSCNHHPKTLSFRTPGGDDDIFKTVNSVFFDQIETPKSCFTTTSSGSASFSTESDEYYCYNDGELLETLVRGVKSERSSERLFFEAEDTSSILEKAKADGFPFKESVVLALESDDPYEDFKRSMEEMVESHGVKDWEGLEELLSWYLRVNGKNNHGFIVGAFVDLLISLTGSNDSSNSCSELTLYSSAVSSFASSPTLYLSEGQNEITEIEDNNNNNVTDS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5272 246 Pfam Transcriptional repressor, ovate 138 194 IPR006458 -
Psa6g5272 246 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 6 221 IPR038933 GO:0045892
Psa6g5272 246 ProSiteProfiles OVATE domain profile. 134 193 IPR006458 -
Psa6g5272 246 PANTHER TRANSCRIPTION REPRESSOR OFP13 6 221 - -
Psa6g5272 246 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 133 195 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5272 Psa-Chr6 463891419 463892899 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Psa6g5272 Ovate 5.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5272 - - mtr:MTR_1g111640 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0711 3 63236486 63238198 Psa6g5272 6 463891419 463892899 ECH
Psa6g5272 6 463891419 463892899 Psa6g5272 6 463891419 463892899 ECH