Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5236 ATGTTGGGTTCTAGAAAATCTAGAGCCAAACCAAGGCCTCAACCTTTGAAGATGATAAGGAAATTGAAGATAGTTTATGATGATCCTTATGCAACTGCTTCTTCGTCCGAAGATGAGTTGCAACCGAGCCGAATAAGGCGGGGCTGCCTCGAGATCCCTCTTCCTTTTATCCCTGTTGTGTCTGCAATAGCTCCTCCTCAAGATAACTCCTTTTATGATGGGAAGGAGAAGATTGCAGCAAGGAGGAAGAGTTGTCTCGCGGCACGACGAGCCCAAACCAAGAAGAGGTCTGTTCCATCCGCTACTCCGACTCAGACTCAGACGACAAGGAGACAATCTTCTGCGAAGTATCGAGGAGTTCGAATGAGGAAATGGGGGAAATGGGCGGCGGAGATTCGCGATCCGTTTAAAGGTGCTAGAATCTGGCTTGGAACTTACAACACTGCAGAAGAAGCTTCACAAGCTTATGAATCCAAAAGGCTTCAATTTGAAATGGAAGCGAAAGCATATGAAGAAGAAGAAGAAGCATGCATCAAGAATAACAATAGTTGCTCTATCAACAACACCAACAATGCTCCAGCACCGGCTGCAACTACCTCTTCCGCGGATGCTGCGAATGCTTCTGTGTCGGAGAAATTTTCAACTACGGAGGATTCTGAAAGCTTGTTCTCGCATACATCGCCTTCTTCCGTGCTTGAATTGGATACTCTAGCATCCAATGCAACGGAGAAGGTTGATGCTCCGGCTGAAGATGAAGCTAGTGAAATGATGGCATATCAACTTGAAGAGCTAGAAATTCCAGATCTGAGTGTTTTGAACTTGCCAGAGCCACCTGTTGCTGCCGCAGAGAATCCAATTGGGACTGATCTCAATATTGGGTTTGGATTCGATTTTGATCGGTTTAACATCGATGATTTTGGACAGGATTTCGATGAGTTTGGTGAGTTTAGGGATATTCACATTCATGGCTTCGACGACAATGAACCTAGTGAACTTCCTGATTTCGATTTTGGCGAGATTGGTGGTGAAGACGATGAATTTGCTGGTTGGATTGAAGAGCCATTCCAGCACAACATTTCATGTGTCTAA 1089 0.4518 MLGSRKSRAKPRPQPLKMIRKLKIVYDDPYATASSSEDELQPSRIRRGCLEIPLPFIPVVSAIAPPQDNSFYDGKEKIAARRKSCLAARRAQTKKRSVPSATPTQTQTTRRQSSAKYRGVRMRKWGKWAAEIRDPFKGARIWLGTYNTAEEASQAYESKRLQFEMEAKAYEEEEEACIKNNNSCSINNTNNAPAPAATTSSADAANASVSEKFSTTEDSESLFSHTSPSSVLELDTLASNATEKVDAPAEDEASEMMAYQLEELEIPDLSVLNLPEPPVAAAENPIGTDLNIGFGFDFDRFNIDDFGQDFDEFGEFRDIHIHGFDDNEPSELPDFDFGEIGGEDDEFAGWIEEPFQHNISCV* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5236 362 MobiDBLite consensus disorder prediction 95 115 - -
Psa6g5236 362 SUPERFAMILY DNA-binding domain 116 163 IPR016177 GO:0003677
Psa6g5236 362 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Psa6g5236 362 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Psa6g5236 362 MobiDBLite consensus disorder prediction 89 116 - -
Psa6g5236 362 SMART rav1_2 116 170 IPR001471 GO:0003700|GO:0006355
Psa6g5236 362 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Psa6g5236 362 Gene3D AP2/ERF domain 115 170 IPR036955 GO:0003700|GO:0006355
Psa6g5236 362 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 16 361 - -
Psa6g5236 362 Pfam AP2 domain 116 164 IPR001471 GO:0003700|GO:0006355
Psa6g5236 362 MobiDBLite consensus disorder prediction 208 227 - -
Psa6g5236 362 Coils Coil 153 173 - -
Psa6g5236 362 CDD AP2 115 156 IPR001471 GO:0003700|GO:0006355
Psa6g5236 362 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5236 Psa-Chr6 460743192 460745869 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5236 13 361 AP2-EREBP Transcription Factor Family AT1G68550 32.410 2.12e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa6g5236 AP2 6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5236 - - mtr:MTR_1g105400 331.257