Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5235 ATGAAATTGAGTTGCAATGGTTGTCGCGTTCTTCGTAAAGGATGCAGTGAAGATTGCATCATCAAGCCTTGCCTTGAGTGGATTAGTTCTCCTGAATCTCAAGGCAATGCTACCCTCTTCCTTGCCAAATTCTTTGGCCGAACTGGCTTGCTAAACCTTCTTGCCAATGCTTCTAATCAAAATGCCCCGGCTGTTTTTAGATCACTATTGTACGAGGCTTCAGGTAGATTGGTAAATCCAACATATGGAGCACTAGGTTTATTTTGGAGAGGAGAATGGAGCCGATGTGAAGCTGCAGTTGAAGCCGTGCTGACTGGATCAGACATTAATGATGTTATAGTTGCTGATGAAAATATATCATCAGCTACACCTGTGGCTGAAAATCACGTCCTTCCAATTTCAACAACCTATGATATACGCCATGTGGCAAAAGGCACCAATATCGACATCAAAGAGAAAACTCAATTCAAGAGAAGTGGACAAGTTTTCAAAACAAAACCACAACTTTCTATCAACTCGGAAACACTTTTGAAATCCTTTTTAGAAAATACTAATGTGAAAACTATAGAGACTTCATTGGTGAATCAAACTGAACCGAGTGAAGCCATTGAGACTCAGGTAAACCTAGAGCTCAGCCTCAGTTTCAATGGAAAATCGAATCAAACAAAAGAAAAAAAATAG 681 0.3994 MKLSCNGCRVLRKGCSEDCIIKPCLEWISSPESQGNATLFLAKFFGRTGLLNLLANASNQNAPAVFRSLLYEASGRLVNPTYGALGLFWRGEWSRCEAAVEAVLTGSDINDVIVADENISSATPVAENHVLPISTTYDIRHVAKGTNIDIKEKTQFKRSGQVFKTKPQLSINSETLLKSFLENTNVKTIETSLVNQTEPSEAIETQVNLELSLSFNGKSNQTKEKK* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5235 226 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Psa6g5235 226 PANTHER LOB DOMAIN PROTEIN 1 224 - -
Psa6g5235 226 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 224 - -
Psa6g5235 226 Pfam Lateral organ boundaries (LOB) domain 4 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5235 Psa-Chr6 460677009 460678597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5235 1 209 AS2 family AT1G68510 44.348 1.30e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa6g5235 LOB 5.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5235 - - mtr:MTR_1g110840 297.745