Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5230 ATGGCGGAGAGCCAAAATCCTACCATACCGGCTGCTTTGACGGAAAACCCCGCAATAGTGGCCTTTATTTACCATTGTGGCGAGTCTAAAAACCGCCATGCTAAGCCGGATCCCGATCTCTTTAATGCAAAGCAAAAAGCAACGACACCTCCTGTTTCTGAAACTGAACCTCTTGCATTTAGTTCGAAGAAAAAATCGAAGGAGGGGTGGAGTTGTGCACTGTGTGAAATTAAGGCCACGAGTGAGAGTGGCTTGAATGCTCATTTGAACGGTAAGAAGCACAAGGCTAGAGAAGCAGGACAGAACAGGAAGATTGCTAAGAGAAACAAAAAAAGTAGGGATAATGTGATGGTTGCTGAAACAGATGTTACTACCACAAAGTTATTGGTTGATGTAGAAAAAGATCAACAACTTCTTCAACCTTGCATAACCTTAGAAGTCATGAATGAGACTGCTGTTGATAAGGGTGTCGAAGAAAGTAAAAGAGAGGAGCAGCTTGCGAAGACGGTGGCTGATAATGATGCAAGTGCAACAGAATCAAAAAATGACAAGTTTGTGGCGATGATGGTTGGTAAAAATGAGGAGCAACTTGGGGAAACAGTTGCTGATAATGGTGGAAGTGTAATAAAATCCACAAATGAGGATAAGCTCGTAGAGATGATGATCGGTAATGATATTATAAAATTTGAAAATGGGGGGCTAGTTGCGGAGAAAAGGCAAAATGTAGGTTCTTTGGAGAGTAAAAGAGATGTTGCAATGGATGAAGCGGAGAAGATAAGTGCATTAACAAAAAGGAGAAAGGTTGAACCTTTGTGGTGTGAAATTTGTGAAATTAGCACTTTCTCAAAAGCTGTGATGGAAGGTCATGTGAAAGGGAAAAAACACATAAAGAAAATGAAGAAGTTTGGACAAAACAATGTAAGTCCCCTATCCACGTCTTCTGTATCACAAAAAGCTCCTCCTATGTTGATCAAAGATGCATAA 984 0.4075 MAESQNPTIPAALTENPAIVAFIYHCGESKNRHAKPDPDLFNAKQKATTPPVSETEPLAFSSKKKSKEGWSCALCEIKATSESGLNAHLNGKKHKAREAGQNRKIAKRNKKSRDNVMVAETDVTTTKLLVDVEKDQQLLQPCITLEVMNETAVDKGVEESKREEQLAKTVADNDASATESKNDKFVAMMVGKNEEQLGETVADNGGSVIKSTNEDKLVEMMIGNDIIKFENGGLVAEKRQNVGSLESKRDVAMDEAEKISALTKRRKVEPLWCEICEISTFSKAVMEGHVKGKKHIKKMKKFGQNNVSPLSTSSVSQKAPPMLIKDA* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5230 327 PANTHER OS06G0651300 PROTEIN 34 317 - -
Psa6g5230 327 SUPERFAMILY beta-beta-alpha zinc fingers 265 301 IPR036236 -
Psa6g5230 327 MobiDBLite consensus disorder prediction 301 327 - -
Psa6g5230 327 SMART ZnF_U1_5 268 302 IPR003604 GO:0003676|GO:0008270
Psa6g5230 327 SMART ZnF_U1_5 67 101 IPR003604 GO:0003676|GO:0008270
Psa6g5230 327 SUPERFAMILY beta-beta-alpha zinc fingers 46 101 IPR036236 -
Psa6g5230 327 MobiDBLite consensus disorder prediction 91 113 - -
Psa6g5230 327 Gene3D Classic Zinc Finger 248 302 - -
Psa6g5230 327 MobiDBLite consensus disorder prediction 156 175 - -
Psa6g5230 327 Gene3D Classic Zinc Finger 60 105 - -
Psa6g5230 327 PANTHER OS06G0651300 PROTEIN-RELATED 34 317 - -
Psa6g5230 327 Pfam Zinc-finger of C2H2 type 70 94 - -
Psa6g5230 327 Pfam Zinc-finger of C2H2 type 272 295 - -
Psa6g5230 327 MobiDBLite consensus disorder prediction 304 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5230 Psa-Chr6 460215169 460216541 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5230 11 132 C2H2 Transcription Factor Family AT2G19380 28.346 7.19e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5230 - - mtr:MTR_4g130690 278.87