Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5227 GAATTGAATGATGAAGCTTCAGAGTTGCCATCATCAAAAGCTACCCCACCATCACGTTCTTCATCAAAGAAAAGCAGAGCTGCAGAGTTTCATAATTTATCTGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAATTGAAAGCTTTGCAGAATTTTATTCTGAATTCTAATAAGACAGACAAAGCTTCAATGCTTGATGAGGCTATAGAATATTTAAAGCAGCTTCAACTTCAAGTGCAATGTTGGTGA 249 0.3574 ELNDEASELPSSKATPPSRSSSKKSRAAEFHNLSEKRRRSKINEKLKALQNFILNSNKTDKASMLDEAIEYLKQLQLQVQCW* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5227 82 MobiDBLite consensus disorder prediction 24 39 - -
Psa6g5227 82 SMART finulus 32 81 IPR011598 GO:0046983
Psa6g5227 82 PANTHER TRANSCRIPTION FACTOR SPATULA 6 81 - -
Psa6g5227 82 Pfam Helix-loop-helix DNA-binding domain 30 76 IPR011598 GO:0046983
Psa6g5227 82 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 81 IPR036638 GO:0046983
Psa6g5227 82 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 6 81 IPR031066 -
Psa6g5227 82 Gene3D - 21 81 IPR036638 GO:0046983
Psa6g5227 82 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 26 75 IPR011598 GO:0046983
Psa6g5227 82 MobiDBLite consensus disorder prediction 1 23 - -
Psa6g5227 82 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5227 Psa-Chr6 459710308 459710556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5227 26 80 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 89.091 1.42e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g5227 HLH 8.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5227 - - mtr:MTR_1g019240 121.709