Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5205 ATGAGACCACAAGGAAACCCTTTAGATCTTAACAATTTGCCTGATGAATACTCTCGAGATCATGGTAAACAACTCCTTGAAGACACCGATCCACCCGGTTGTAGGAAAAAGAAAAACGGCGGGAAGGAAGGAAAAGAAGAGTGTGGGAAGGTCTATGAGTGTAGATTTTGTTCCCTCAAGTTCTGTAAATCTCAGGCTCTTGGAGGGCACATGAACCGTCACCGACAAGAAAGGGAAACAGAGACACTTAACCATGCTCGTCAGTTAGTCTTCAGAAATGATCATAACATTGCACCACAACCTCCTTCTCACCTTGTAGGATGTTGTCCACCACCAATAGCAACAGGTGGTTATATTCCAGCAAACACCATGGGAGTTGATCCAACAATGCCGCCGAGATTTCCGAGATACTTCTCCGGATCATCGTCTTCATCTCACATTCCCGCGCCTCCACCGCAACCACCACAGCCATTTCTATACTCTTCGCCTTCACGTCCGGTTTCATTTCCAGCACACTTGATTCCTCATCACCCGATGAACGAATATCACGTCGGACACGTGATGAGTAATAGCCACGGCCACAGCCACCAGCAGCAGTATGGTGGACATGGACAACACAACTTTGGTGGAGGTGAGTCGAATTACACGTGCATAGGTGCACCGGTTGGACAAGGATTTAGCGGCGGTGTCGGAGGTGGTGGTGGTGGTGGGAAGGATCATCATCAAGAGGAAGCAGGAGGAGGAGGAGCGTTGAACTGGGGAAGAAGCTACTCAGGAACACAGCAGCAGCATCGTTTGGATAGTCATTCAGCAGCGATCAATCGGTTTCAAGATGGTTTCTAA 843 0.4864 MRPQGNPLDLNNLPDEYSRDHGKQLLEDTDPPGCRKKKNGGKEGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHNIAPQPPSHLVGCCPPPIATGGYIPANTMGVDPTMPPRFPRYFSGSSSSSHIPAPPPQPPQPFLYSSPSRPVSFPAHLIPHHPMNEYHVGHVMSNSHGHSHQQQYGGHGQHNFGGGESNYTCIGAPVGQGFSGGVGGGGGGGKDHHQEEAGGGGALNWGRSYSGTQQQHRLDSHSAAINRFQDGF* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5205 280 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Psa6g5205 280 SUPERFAMILY beta-beta-alpha zinc fingers 50 80 IPR036236 -
Psa6g5205 280 MobiDBLite consensus disorder prediction 1 42 - -
Psa6g5205 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Psa6g5205 280 MobiDBLite consensus disorder prediction 14 42 - -
Psa6g5205 280 Gene3D Classic Zinc Finger 34 102 - -
Psa6g5205 280 PANTHER ZINC FINGER PROTEIN JAGGED 1 243 IPR045320 GO:0003700
Psa6g5205 280 PANTHER ZINC FINGER PROTEIN JAGGED 1 243 IPR031113 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5205 Psa-Chr6 449566405 449568802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5205 4 225 C2H2 Transcription Factor Family AT1G13400 40.969 4.21e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5205 - - mtr:MTR_1g110710 354.369