Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5189 ATGATTAAAGACATACCTGGCATCTCATGTTTTGAGGACATGCCTGCTAAATTTGTAGCTTTACAGAAAGAGGCACTTTATAGCACACAGAAGGAGGGTGAAGGCACTAGTCGCTTAAAACAACTGGAGGTGGCTTTGGATGCTGCTGAGATTGGTAAACAAAATGCCGAAACTGAGGCTGTGTTGGCCAAAGAGAAAGCGGAAGTATTAAAATCAGAGATCAAACAGATTGAATTAACGCTTGCAGTTGTTACAGAGGAAAGAAACAAGTTAAGAATTCTTGCCAAATTGAAGAATAGTGAGGCTGGGGATGAATCAACTATTATAAAGGCCACAGACAGTCAACCATTACCACATGCTGCCTCTATTGTACGTTTAATTACGAAGTACTTCAAGACATGTGAGATGCCAGAAATAAGGATTAAGATCTATTCAGTTGCAAAGATTATGCTCATATCCATGGGTGTTGGAATGGCTTTATGTCTGTCAAAGGAAGTTGTCGATAATGCGATCGCTGCAAGTCCTTACGAAACCAACAGTGACGATGACGAAGTTGCCGTCACCGTCCATGCCACCAATAATTACTTTGTGACTGCATCGCTTGACGGCACATGGTGCTTTTATGAACTGTCTTCAGGCACTTGTCTGACTCAGGTTTCAGACTCTTCTCAAGGCTACACATCTGCAGCTTTCCATCCTGATGGTCTTATTCTTGGAACAGGCACTACAGATTCTCTTGTTAAGATCTGGGATGTAAAAGGTAAGGCAAATGTTGCCAAGTTTGATGGACATGTGGGGGATGTAACTGCAATATCATTTTCTGAGAATGGATACTACCTTACGACTGCGGCTAAGGATGGTGTAAAGCTTTGGGATCTACTTGCATCAATGGACCAGAATCTTAGAATATTTGGCCAATCCAATGAAGGCTTCTGCTCATCAAAGAAAAGTGAGAGCGGGCCAGATCATGCATCATCAACTGGAATGAGTCACAGAATTCGTGAGAGAACCGATGCTCTTGATGCTGCAGGAAATACAACTGCTGCCATTGGAAAAGGGTTTGCTATCGGTCCTGCTAGCTTCTTTATCATTATATATAACACCTTTGTCTAG 1113 0.4223 MIKDIPGISCFEDMPAKFVALQKEALYSTQKEGEGTSRLKQLEVALDAAEIGKQNAETEAVLAKEKAEVLKSEIKQIELTLAVVTEERNKLRILAKLKNSEAGDESTIIKATDSQPLPHAASIVRLITKYFKTCEMPEIRIKIYSVAKIMLISMGVGMALCLSKEVVDNAIAASPYETNSDDDEVAVTVHATNNYFVTASLDGTWCFYELSSGTCLTQVSDSSQGYTSAAFHPDGLILGTGTTDSLVKIWDVKGKANVAKFDGHVGDVTAISFSENGYYLTTAAKDGVKLWDLLASMDQNLRIFGQSNEGFCSSKKSESGPDHASSTGMSHRIRERTDALDAAGNTTAAIGKGFAIGPASFFIIIYNTFV* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5189 370 Pfam Inorganic H+ pyrophosphatase 327 361 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Psa6g5189 370 SUPERFAMILY WD40 repeat-like 185 304 IPR036322 GO:0005515
Psa6g5189 370 Pfam WD domain, G-beta repeat 257 292 IPR001680 GO:0005515
Psa6g5189 370 Pfam WD domain, G-beta repeat 227 251 IPR001680 GO:0005515
Psa6g5189 370 Gene3D - 175 340 IPR015943 GO:0005515
Psa6g5189 370 PANTHER PRE-MRNA-PROCESSING FACTOR 19 186 293 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Psa6g5189 370 MobiDBLite consensus disorder prediction 312 326 - -
Psa6g5189 370 MobiDBLite consensus disorder prediction 312 331 - -
Psa6g5189 370 SMART WD40_4 254 292 IPR001680 GO:0005515
Psa6g5189 370 SMART WD40_4 172 209 IPR001680 GO:0005515
Psa6g5189 370 SMART WD40_4 212 251 IPR001680 GO:0005515
Psa6g5189 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 293 IPR001680 GO:0005515
Psa6g5189 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 253 - -
Psa6g5189 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 260 IPR001680 GO:0005515
Psa6g5189 370 Coils Coil 39 87 - -
Psa6g5189 370 ProSitePatterns Trp-Asp (WD) repeats signature. 238 252 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5189 Psa-Chr6 446832833 446834653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5189 176 304 U-box Gene Family AT2G33340 71.212 1.57e-57 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5189 K10599 - gmx:100527039 198.749