Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5163 ATGGCGTCAACACTCTCTCTTCTCATTCTTCTTCTTACCTTCTCCCATTTTCTCCTCATTGTTCAATCTTCTGAAAATCCAGATTTCGAAGCTCTTGTAGCTTTCAAAACCGCTTCAGACCCATCCAAAAAACTCATAACATGGAAAACCGGCACCGACCCATGTACTTGGGACGGCGTTTCCTGCGTAAAAGACCGAGTTTCCCGACTCGTTCTCGAAAATCTCGAACTCCAAGGCTCCATTGAGCCTTTAACTTCTCTAACTCAGCTCCGAGTTTTGAGTCTCAAGGGAAACCGTTTCTCCGGTGAAGTTCCGAGTCTCTCAAACTTCACTTCACTAAAGCTTCTCTTCCTCTCTCACAACCATTTCTCCGGCGAGTTCCCGGTGACTGCAACTTCCCTTTCCCGTCTCTACCGTCTTGATCTGTCTTACAATAACTTCTCCGGCGAGATTCCGTTGACAGTCAACCATTTACCTCACCTCCTCACTCTCCGTCTCGATGAGAATCAATTCTCCGGCCTCATTCCCAAACTAAACCTTCCCGATTTACAAGACTTCAACGTCTCCGGTAACCGTCTATCCGGCGAGATACCGAGAACTCTGTCGACATTCTCCGAATCCTCTTTCCGGCAAAACTCGTTTCTCTGTGGAGCTCCGTTGGAGAAATGCAAAGCGGAACCGAACAAGCCTGGATCCGAAGGTGCCATAGCTACTTCACCATTGGTACCAAGCAGCGACATTCTAGTTCTCGGAATCGTTTGTTTACTTCTCTACTGCTATTTCTGGAGAAACTACTCTTCGAAATCGAAAGAACGAAAAGGGTTGAAGCTATTTGAAAGCGAAAAGATAGTGTATTCATCAAGTCCTTATCCAACTCAAGGAGGGTTTGAGAGGGGTAGAATGGTGTTTTTCGAAGGCGAGAAAAGGTTTGAGCTTGAGGATTTGTTGCGTGCTTCAGCTGAAATGCTTGGGAAAGGAGGATTTGGAACTGCTTATAAAGCTGTGCTTGATGATGGAAATGTTGTTGCTGTGAAGAGATTGAAAGATGCACAGATTGCAGGGAAGAGAGAGTTTGAGCAACATATGGAGGTTCTTGGCAGGATTAGGCACCCAAATGTTGTGAGTTTGAGAGCTTATTATTTTGCAAGAGAAGAGAAGCTTTTGGTGTATGATTTCATGCCTAATGCTACTTTGTTCTGGCTTCTTCATGGAAACAGAGGACCTGGAAGAACCCCACTGGATTGGACCACAAGGCTCAAGATAGCAGCTGGAGCAGCACAAGGTGTAACTTTCATTCACAATTCATGTAAATCCCTTAAACTCACCCATGGTAACATCAAATCTACTAATATCCTCCTTGACAAGCAAGGAAACGCACGGGTGTCGGATTTTGGGCTTTCAATCTTCAACAGCCCAAGCCCAATTGGAGCTGGTGGTAGATCAAACGGTTACCGTGCTCCTGAAGTAACCGACGGTCGAAAACAGTCGCAGAAATCTGACGTGTACTCTTTTGGTGTTCTGTTGCTAGAGCTGCTCACAGGGAAGTGTCCATCTGCTGTGGAGAGTGGTGGAAGTGGAGGTGGTTATGGTGGTGGGATGGTTGATCTTCCTAGGTGGGTTCAATCCGTTGTGAGAGAGGAATGGACTGCTGAGGTTTTTGATTTGGAGTTGATGAGGTATAAGGATATTGAAGAGGAAATGGTTGGGTTGCTTCAGATTGCTATGTCTTGTACGGCTGCTTCACCTGATCAAAGGCCGAGAATGTCACACGTTGTTAAGATGATTGAGGACTTGCGTGGGGTCGAAGTGTCACCATGTCATGACACGGCGGGCTCTGTCTCTGACTCACCTTCTTTGTCTGAAGATGCCTGTGTTGGCACTAGTAGTCAGTAA 1893 0.4622 MASTLSLLILLLTFSHFLLIVQSSENPDFEALVAFKTASDPSKKLITWKTGTDPCTWDGVSCVKDRVSRLVLENLELQGSIEPLTSLTQLRVLSLKGNRFSGEVPSLSNFTSLKLLFLSHNHFSGEFPVTATSLSRLYRLDLSYNNFSGEIPLTVNHLPHLLTLRLDENQFSGLIPKLNLPDLQDFNVSGNRLSGEIPRTLSTFSESSFRQNSFLCGAPLEKCKAEPNKPGSEGAIATSPLVPSSDILVLGIVCLLLYCYFWRNYSSKSKERKGLKLFESEKIVYSSSPYPTQGGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQIAGKREFEQHMEVLGRIRHPNVVSLRAYYFAREEKLLVYDFMPNATLFWLLHGNRGPGRTPLDWTTRLKIAAGAAQGVTFIHNSCKSLKLTHGNIKSTNILLDKQGNARVSDFGLSIFNSPSPIGAGGRSNGYRAPEVTDGRKQSQKSDVYSFGVLLLELLTGKCPSAVESGGSGGGYGGGMVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMSCTAASPDQRPRMSHVVKMIEDLRGVEVSPCHDTAGSVSDSPSLSEDACVGTSSQ* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5163 630 CDD STKc_IRAK 323 598 - -
Psa6g5163 630 MobiDBLite consensus disorder prediction 607 630 - -
Psa6g5163 630 Gene3D Ribonuclease Inhibitor 26 178 IPR032675 -
Psa6g5163 630 SUPERFAMILY Protein kinase-like (PK-like) 321 595 IPR011009 -
Psa6g5163 630 Gene3D Phosphorylase Kinase; domain 1 297 392 - -
Psa6g5163 630 ProSiteProfiles Protein kinase domain profile. 317 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5163 630 PANTHER - 245 612 - -
Psa6g5163 630 PANTHER - 22 226 - -
Psa6g5163 630 SUPERFAMILY L domain-like 41 221 - -
Psa6g5163 630 Gene3D Ribonuclease Inhibitor 179 224 IPR032675 -
Psa6g5163 630 Pfam Protein kinase domain 321 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5163 630 Gene3D Transferase(Phosphotransferase) domain 1 393 609 - -
Psa6g5163 630 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Psa6g5163 630 ProSitePatterns Protein kinases ATP-binding region signature. 323 355 IPR017441 GO:0005524
Psa6g5163 630 MobiDBLite consensus disorder prediction 609 630 - -
Psa6g5163 630 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 22 226 - -
Psa6g5163 630 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 245 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5163 Psa-Chr6 444663286 444669792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5163 28 630 Receptor kinase-like Gene Family AT1G68400 64.923 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa6g5163 Pkinase 4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5163 - - gmx:100779158 975.311