Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5154 ATGCCTTCAGTTAATGTAGTAGCAGTACATCATAATCATAGGTTCCTTATGTTCTCTCATTTAACTCTACTACTGTTACTTATCTTAACTAGCAAAGGAAATGGACACAGTAATGGTTGTCCAGTCTCATTTGATTGTGGAAATCTTGGTTCTATTGGCTACCCTTTTACCAAGGTTAGTTTCCCAAACTGTGGTGCATTGCCAATTCAAGGTTGTGATGATGTTAACAAAACTGCAATCAAGACTATTCAATTAACCAAAGGAGGAACACACTTTCAAGTTACAAAAATTGATAATAGCTGGTCCAGGGGTAACCCTATTTCCATTATTGACCAGAATTTCACCAACCTTTTGATGAAAAATGCTTGTGAAGTCTACAACTATGTTAACATTACCCTCCCTCCTCCCTCTTTTTTCGGAACTTTTTATATCAAAGACAATATAACTGCTTTCAAATGCAACCGTACCATAAAACTAGTCACCGATCCTCCAAGTAATTTCTTCAAAAATAGTTCTTGTCCGAACTATGATTTTTATTTCGGCGATTCGATATCCGATGGTTACTGTGAAAGGTGTCACCGTGATACAAAAGGTCATTGTCGTGCTCGCAACAACGGACAAATTTATTGCGCAGGGAAGGGTAGAAGTTCAACTTTGAAGCTACATTTTATTTTAGGAGTTGTTGGACCATGCATCATCATCATAGTTGGATTGTTCTTCACATTATGGTACTTCAAACGGAAAAATGGCCAAGCAAGCAACAACGTTTCTGCTGATTTCCATCCAAATCGTGAAATGGAGTCAAACAAGCTCTTCTTCGGGGTATCTGTCTTCTCGTATGAAGAGCTTCGACAAGCAACAAACAATTTTGACCGCAGTAGAAAGCTAGGAGATGGAGGTTTTGGCACTGTTTACTATGGGAAAATCAAAGATGGAAGGGAAGTTGCTGTCAAACACTTATTTGAGCACAATTACAGGAGAGTAGAACAGTTTGTGAATGAAATCGAAGTACTTGCTCGCCTGCACCACAGGAATCTAGTGTCCCTCTATGGCTGCACTTCACGTTACAGCCGTGATTTACTCCTTGTATATGAATACATTCCAAATGGAACCGTCGCTAACCATCTCCATGCAATTGATTTCTCTAGGGAAGGAGAGGAAACTAACTTGGCAAATTTAGCAGCTAGGAAGATAAGAAATGGTGCAATTGGGGAGCTGGTTGATCCATCACTTGGGTTTGAATCAGATAGTGAAGTTAAAAGGATGGTAAATTCAGTGGCTGAATTGGCTTTTCAGTGTGTGCTTGGAGACATGGAATTAAGACCTTCCATGGATCAAGTTCTGCAAGAACTCAAGAAAATTGATGGTGGGAATTTTGAGTTTGATCATCTAGAGAGAGTACATGATTATGCTGGGTGCTCGCAGTCTGAAGAAGTAAATTCACCAATAGTTGGAACTTCTATCAATAAGATGCAAGAAGGATCAACTTCACCAAAGTCATTGACTGAGAAATGGGAAAGTGAATCTACTACTCCCAATTAA 1542 0.393 MPSVNVVAVHHNHRFLMFSHLTLLLLLILTSKGNGHSNGCPVSFDCGNLGSIGYPFTKVSFPNCGALPIQGCDDVNKTAIKTIQLTKGGTHFQVTKIDNSWSRGNPISIIDQNFTNLLMKNACEVYNYVNITLPPPSFFGTFYIKDNITAFKCNRTIKLVTDPPSNFFKNSSCPNYDFYFGDSISDGYCERCHRDTKGHCRARNNGQIYCAGKGRSSTLKLHFILGVVGPCIIIIVGLFFTLWYFKRKNGQASNNVSADFHPNREMESNKLFFGVSVFSYEELRQATNNFDRSRKLGDGGFGTVYYGKIKDGREVAVKHLFEHNYRRVEQFVNEIEVLARLHHRNLVSLYGCTSRYSRDLLLVYEYIPNGTVANHLHAIDFSREGEETNLANLAARKIRNGAIGELVDPSLGFESDSEVKRMVNSVAELAFQCVLGDMELRPSMDQVLQELKKIDGGNFEFDHLERVHDYAGCSQSEEVNSPIVGTSINKMQEGSTSPKSLTEKWESESTTPN* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5154 513 Pfam Protein tyrosine and serine/threonine kinase 293 379 IPR001245 GO:0004672|GO:0006468
Psa6g5154 513 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Psa6g5154 513 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 377 513 - -
Psa6g5154 513 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 16 181 - -
Psa6g5154 513 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 188 377 - -
Psa6g5154 513 SUPERFAMILY Protein kinase-like (PK-like) 271 380 IPR011009 -
Psa6g5154 513 MobiDBLite consensus disorder prediction 489 513 - -
Psa6g5154 513 ProSiteProfiles Protein kinase domain profile. 290 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5154 513 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 188 377 IPR044652 -
Psa6g5154 513 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 377 513 IPR044652 -
Psa6g5154 513 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 16 181 IPR044652 -
Psa6g5154 513 Gene3D Phosphorylase Kinase; domain 1 261 366 - -
Psa6g5154 513 Gene3D Transferase(Phosphotransferase) domain 1 374 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5154 Psa-Chr6 444288519 444291023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5154 378 513 Receptor kinase-like Gene Family AT1G25390 39.416 3.38e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Psa6g5154 PK_Tyr_Ser-Thr 2.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5154 - - aprc:113871895 377.481