LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g5137	ATGGCTTCAAGGTCATATTCCAATTTGTTAGATCTTACTTCATGTGGTTCGCCGTCGTCTTTCAGTCGGGAGAAGAGAAGGCTTCCCAGAGTTGCAACTGTGGCTGGAGTGTTGTCTGAATTAGATGATGAAACAAACAACAGTGTTGGCTCTGATGCTCCTTCGTCTGTTTCTCAAGAAAGGATGATTATTGTTGGTAACCAGCTTCCGGTGAAGGCGCAGAGGAAAGAGGAGAATGGTAAGTGGGAGTTTGCTTGGGATGAGGATTCACTTCTTTTACAGCTGAAAGATGGTCTTGGTGATGATGTGGAAACGATTTATATCGGTTGTCTTAAAGAAGAAATTGATCCGATTGAGCAAGATGATGTTGCTCAGTACTTGCTTGACAATTTCAAGTGTGTACCGACTTTTCTCCCTCCTGAGCTTTTTACTAAATTCTATCATGGTTTTTGTAAACAACATCTTTGGCCTTTGTTTCATTACATGCTTCCGCTTTCGCCTGATCTTGGTGGTCGATTCGATCGATCCCTTTGGCAGGCTTATGTTTCTGTCAACAAGATTTTTGCTGATAAAGTGATGGAAGTTATTAACCCTGATGAGGACTTTGTTTGGGTTCATGACTACCACTTGATGGTTCTTCCAACATTTTTGAGAAAGAGATTTAATCGGGCGAGGCTAGGATTCTTCCTCCATAGTCCTTTTCCGTCTTCCGAGATATACCGAACGCTTCCGGTTAGGGATGAACTTCTTAGAGCCCTTCTGAATTCTGACCTTATAGGGTTTCATACTTTTGACTATGCTAGACATTTCCTCTCCTGCTGCAGTAGAATGCTAGGGATTGCTTATCAATCCAAGCGAGGATATATCGGTCTCGAGTATTATGGAAGAACTGTTAGCATTAAGATTCTTCCGGTTGGTATTCATATAGGTCAGCTTGAATCGGTCATGAATCTTTCAGAGACAGAAAGCAAGGTTGCCGAATTAAGAAACCGGTTCAAAGGTCAAACTGTTATGCTTGGGGTGGATGACATGGATATCTTCAAGGGAATAAGCTTAAAACTTTTGGCCATGGAACAACTGCTTTTACAACATGCTGATAAGAGGGGAAAAGTTGTTCTGGTTCAAATCGCAAACCCTGCTAGAGGCCGCGGAAAGGATGTGCAAGAAGTGCAGTGTGAAACTTATGCAACAGTGAAAAGGATAAACGACACATTCGGAAGGCCTGGATACACGCCCGTAATCTTGATCGATACAACACTCCAGAGTTACGAGCGGATTGCTTATTATGCAATTGCGGAATGCTGTCTTGTTACAGCTGTAAGAGATGGGATGAACCTTATACCCTATGAGTATATCATTTGTAGACAAGGAAATGAGAAAATAGACGAGATCTTAGGAATAAGCTCGACTATCCATAAGAAGAGTATGTTGGTGGTGTCTGAGTTCATCGGTTGCTCTCCGTCGTTAAGTGGTGCGATTCGGGTGAATCCATGGAATATTGATGCTGTTGCTGAAGCTATGGATTCTGCATTAATGGTCCCGGAGTCTGAAAAACAAATGAGGCACGAGAAGCATTATAGGTACGTTAGTACACACGACGTTGCATATTGGGCCCGTAGCTTCTTGCAGGACCTGGAAAGAGCTTGTAGGGATCATCTGAGAAGGAGATGCTGGGGAATTGGCTTTGGTTTAGGATTTCGAGTAATTGCTTTGGATCCAAACTTTAGGAAACTATCTGTGGAACATATTGCTTCAGCTTATAAGAGGACAAAGCACCGAGCGATTCTTTTGGATTACGATAGTACTATGGTGCAGCCTGGATCAATTAGTACAACACCTAATGCTGAATCTGTTGCCATCTTGAACAGCTTGTGCAGTGACACCAAGAATTGTGTTTTCCTTGTAAGTGGAAAGGAGAGAAAGACTCTTACCGAATGGTTTTCTTCTTGCGAGAAGCTCGGACTTGCTGCAGAGCACGGCTATTTCGTTAGGACAAGTCATACTGAAGAATGGGAAGCTTGTGTTTCTGTGCCTGATTTCGACTGGAAACAGATTGCTGAGCCAGTTATGCAGTTATATACAGAAACTACTGATGGTTCTAACATAGAGTCCAAAGAGAGTGCTCTTGTTTGGAATTACGAATTTGCAGACCGAGATTTCGGTTCATGCCAAGCTAAGGAGCTTCTCGATCATCTAGAAAGTGTTCTCGCCAATGAGCCTGTTTCAGTTAAAAGTGGCCCAAACATTGTGGAAGTTAAACCTCAGGGTGTGAGTAAGGGCATTGTAGCGGAACGTCTTCTGATAACAATGCAACAAAAGGGAGTGATTCCGGATTTCGTTCTCTGCATTGGCGACGACAGATCGGACGAAGACATGTTTGGAGTAATAACAAGTGCAAGGGCATCGCTATCGCCTATTGCTGACGTGTTTCCTTGTACTGTTGGTCAGAAACCAAGCAAGGCAAAGTATTACTTGGAAGACACAAGTGAGATTTTAAGGATGTTGCAGGGACTTGCCAATGCTTCTGAGCAAAGTGCTGCTAGAAGTTCTTCACAGTTTCCTCATCATTAA	2571	0.4302	MASRSYSNLLDLTSCGSPSSFSREKRRLPRVATVAGVLSELDDETNNSVGSDAPSSVSQERMIIVGNQLPVKAQRKEENGKWEFAWDEDSLLLQLKDGLGDDVETIYIGCLKEEIDPIEQDDVAQYLLDNFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVINPDEDFVWVHDYHLMVLPTFLRKRFNRARLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGIAYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLESVMNLSETESKVAELRNRFKGQTVMLGVDDMDIFKGISLKLLAMEQLLLQHADKRGKVVLVQIANPARGRGKDVQEVQCETYATVKRINDTFGRPGYTPVILIDTTLQSYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKIDEILGISSTIHKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALMVPESEKQMRHEKHYRYVSTHDVAYWARSFLQDLERACRDHLRRRCWGIGFGLGFRVIALDPNFRKLSVEHIASAYKRTKHRAILLDYDSTMVQPGSISTTPNAESVAILNSLCSDTKNCVFLVSGKERKTLTEWFSSCEKLGLAAEHGYFVRTSHTEEWEACVSVPDFDWKQIAEPVMQLYTETTDGSNIESKESALVWNYEFADRDFGSCQAKELLDHLESVLANEPVSVKSGPNIVEVKPQGVSKGIVAERLLITMQQKGVIPDFVLCIGDDRSDEDMFGVITSARASLSPIADVFPCTVGQKPSKAKYYLEDTSEILRMLQGLANASEQSAARSSSQFPHH*	857

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa6g5137	856	Pfam	Trehalose-phosphatase	596	829	IPR003337	GO:0003824\|GO:0005992
	Psa6g5137	856	SUPERFAMILY	HAD-like	593	839	IPR036412	-
	Psa6g5137	856	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	595	795	IPR006379	-
	Psa6g5137	856	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	845	IPR001830	GO:0003824\|GO:0005992
	Psa6g5137	856	Pfam	Glycosyltransferase family 20	61	546	IPR001830	GO:0003824\|GO:0005992
	Psa6g5137	856	Gene3D	-	718	855	IPR023214	-
	Psa6g5137	856	Gene3D	-	592	703	IPR023214	-
	Psa6g5137	856	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	61	550	-	-
	Psa6g5137	856	CDD	GT20_TPS	61	546	IPR001830	GO:0003824\|GO:0005992
	Psa6g5137	856	Gene3D	Glycogen Phosphorylase B;	315	530	-	-
	Psa6g5137	856	TIGRFAM	T6PP: trehalose-phosphatase	591	839	IPR003337	GO:0003824\|GO:0005992
	Psa6g5137	856	CDD	HAD_TPP	594	830	-	-
	Psa6g5137	856	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6	1	845	-	-
	Psa6g5137	856	Gene3D	Glycogen Phosphorylase B;	54	314	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa6g5137	Psa-Chr6	443028534	443032631	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa6g5137	1	854	Trehalose Biosynthesis Gene Families	AT4G17770	77.648	0.0	1415

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa6g5137	K16055		-	gmx:100808051	1539.24