Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5122 ATGCATGACAAGGACGTTTGTTCTCCCTCATCTCAAAGAGGATTCGGCGTCGACCTCAACACTGCCGGCCACATGCAAATGAACGCCGGCGCGTTCGCTTCTTTGTACTCCGCTCTGACTAATAGTAATGAGAATCTTCCGTCACTCTCCGGAAATTTCAACAACGGCGGGGGCGTTTCACTTTATCCGTACTCTGATTCTGAAACTGAGTACGACTCGTTCGTGATACAGAAGCATCAGGATATGGTGAATCGTCACAGCATGTGTCTCAGTCGCCTCATGGAGGCTTCCAATGAGGTTGAAACTCTGCAGCAAGAGAACGAAGAGCTCCGTGCCGTGAACAAAGAGTTGCAGAAGAATCTGAACCTCCTAGTTCAGGCTTCGCTGGAGAATCGATTTGGCCGTGACGGCTCCTCCGTTCAGACACAGTCGATTCCGTTTGATGTATTGCATAGTGTCTGTGGCTTGAATCTTGGAGATGGTAAAGAAAACTGTGATGGTGGTTGGAATAACTATAACATCAAGAATACTAATAATAGTAGCAAGGAGCTGCAGGAAGATTCGGATGAGAGTTCAACGAGTGTGATAGATAATAACGATGTTGATGTTGATGCGGAACGGTTCTCGCTGCCGAAGAGCATATCTGTGAGATCCAATGGCTACGTGAAGGTGGCTCAGCCTCCAGCCACCGTAACTAACAATAACGCTGGCCGCATCACCAAGGGCGCTACCCGCTCTCGTGCGTCTTCCACTCAACCAGATCACGTTCAAAAGGTATATGTGCGAGGAGGAGGGCAGAAAGAGGAGGAGCCTCTTGAGATGACTGTGTATAATCAGGGGATGTTCAAGACTGAGCTGTGTAACAAATGGCAGGAAACTGGCACATGCCCGTATACTGACCACTGCCAATTCGCTCACGGTATTGGGGAGCTTCGCCCGGTGATCCGCCACCCACGCTACAAAACTGAGGTCTGTAGGATGGTTTTTGCTGGGGTTGTCTGCCCGTATGGCCATAGATGCCATTTCCGTCATGCACTTACTGAGCAAGAGAAAGCTATAGCACAATCCACGCCCAGATCAAGGAAGATGGAAAGATAA 1098 0.4927 MHDKDVCSPSSQRGFGVDLNTAGHMQMNAGAFASLYSALTNSNENLPSLSGNFNNGGGVSLYPYSDSETEYDSFVIQKHQDMVNRHSMCLSRLMEASNEVETLQQENEELRAVNKELQKNLNLLVQASLENRFGRDGSSVQTQSIPFDVLHSVCGLNLGDGKENCDGGWNNYNIKNTNNSSKELQEDSDESSTSVIDNNDVDVDAERFSLPKSISVRSNGYVKVAQPPATVTNNNAGRITKGATRSRASSTQPDHVQKVYVRGGGQKEEEPLEMTVYNQGMFKTELCNKWQETGTCPYTDHCQFAHGIGELRPVIRHPRYKTEVCRMVFAGVVCPYGHRCHFRHALTEQEKAIAQSTPRSRKMER* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5122 365 Gene3D - 275 314 - -
Psa6g5122 365 Gene3D - 315 351 - -
Psa6g5122 365 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 48 357 - -
Psa6g5122 365 PANTHER CCCH ZINC FINGER/TIS11-RELATED 48 357 IPR045877 GO:0003729
Psa6g5122 365 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Psa6g5122 365 Coils Coil 93 127 - -
Psa6g5122 365 ProSiteProfiles Zinc finger C3H1-type profile. 281 309 IPR000571 GO:0046872
Psa6g5122 365 SUPERFAMILY CCCH zinc finger 316 346 IPR036855 GO:0046872
Psa6g5122 365 MobiDBLite consensus disorder prediction 180 199 - -
Psa6g5122 365 SUPERFAMILY CCCH zinc finger 278 313 IPR036855 GO:0046872
Psa6g5122 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 282 307 IPR000571 GO:0046872
Psa6g5122 365 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Psa6g5122 365 SMART c3hfinal6 281 308 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5122 Psa-Chr6 441508889 441511485 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5122 64 354 C3H Transcription Factor Family AT1G68200 50.676 9.83e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa6g5122 zf-CCCH 1.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5122 K18753 - gmx:100796550 465.692