Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5121 ATGCTACTGTCCATGGGAATTTCACCTCTACCTTTATTTCTCTCTTCTACTTCTTCACTATCCTTTTCACTTTCACCTTCTACTACGAAAACTCTCCGAAACACTTCCTTCAAAATCAAAACCCTTAAAACTGAAAGAGAACCTTCGTCATCAGATCCAAATCCAGGTTTCGATCCTAAACCAGGTGTAGCCGTTTACAAACCTAAATCCTATCAAGTTCTCGCCACTGATGCTTCTTATTCCCTCGCTTATGCTCTTCAAGACGGAAAACTTCATCTCGAGATCGATTTGCCTCGCCGCATGGAGGCTTCCAATGAGGTTGAAGCTCTGCAGCAAGAGAACGAAGAGCTCCGTGCGGTGAACAAAGAGTTGCAGAAGAGTCTGAACCTCCTAGTTCAGGCTTCGCTGGAGAATCAATTTGGCCATGGCGGCTCCTCCGTTCAGACACAATCGATTCTGTCTGATATATTGCACAGTCTCCGTGGCTTGAGTCTTGGAGATGGAAAAGAAAACTGTGCTGGTGGTTGGAATAACAATAACATCAAGAATAATAATAATAGTAGCAAGGAGCTGCAGGAAGATTCGGATGAGAGTTCAACGAGTGTGATAGATAATAACGATGTTGATGTTGATGCAGAACGGTTGTCGCTGCCGAAGAGCATATCTGTGAGATCCAATGGCTATGCGATGCAGGAAGATTCGGATGAGAGTTCAACGAGTGTGATAGATAATAACGATGTTGATGTTGATGCAGAACGGTTGTCGCTGCCGAAGAGCATATCTGTGAGATCCAATGGCTATGTGATGGTGGCTCAGCCTCCAACCGCCGTAACTAACAATAATGCTGGTCGCAGTACCAAGAGCGCTACCCGCTCTCAGGCGTCTTCCACTCATCCAGATTACGTTCAAGAGGTATATGTGCGAGGTGGAGGGCAGAAAGAAGAAGAGCCTCTTGAGATGACTGCCGTTGATCAGTGGAGGTTCAAGACTAAGCTGTGCGCAAATTGGCAGAGAACTGGCACATGCCCTTATACTGACAACTGCCAATTCGCTCACGGTATTGGGGAGCTTCGCCCGTTGATCCGCCACCCACGCTACAAAACTGAGGCCTGTAGGATGATTTTAACTGGGATTGTCTGCCCGTATGGCCATAGATGCTATTTCCGTCATGAACTTACTGACCAAGAGAAAGCTATATCACAATCTAAAGCCAAGATCAGGAAAGCTGGAAAGATAAACAGTCTCATGGAGTTGTTTGACTCAAAAGATACGATAGTACATACATAG 1287 0.4569 MLLSMGISPLPLFLSSTSSLSFSLSPSTTKTLRNTSFKIKTLKTEREPSSSDPNPGFDPKPGVAVYKPKSYQVLATDASYSLAYALQDGKLHLEIDLPRRMEASNEVEALQQENEELRAVNKELQKSLNLLVQASLENQFGHGGSSVQTQSILSDILHSLRGLSLGDGKENCAGGWNNNNIKNNNNSSKELQEDSDESSTSVIDNNDVDVDAERLSLPKSISVRSNGYAMQEDSDESSTSVIDNNDVDVDAERLSLPKSISVRSNGYVMVAQPPTAVTNNNAGRSTKSATRSQASSTHPDYVQEVYVRGGGQKEEEPLEMTAVDQWRFKTKLCANWQRTGTCPYTDNCQFAHGIGELRPLIRHPRYKTEACRMILTGIVCPYGHRCYFRHELTDQEKAISQSKAKIRKAGKINSLMELFDSKDTIVHT* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5121 428 Coils Coil 100 134 - -
Psa6g5121 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 328 353 IPR000571 GO:0046872
Psa6g5121 428 MobiDBLite consensus disorder prediction 225 246 - -
Psa6g5121 428 SUPERFAMILY CCCH zinc finger 324 359 IPR036855 GO:0046872
Psa6g5121 428 ProSiteProfiles Zinc finger C3H1-type profile. 365 393 IPR000571 GO:0046872
Psa6g5121 428 SMART c3hfinal6 327 354 IPR000571 GO:0046872
Psa6g5121 428 SMART c3hfinal6 365 392 IPR000571 GO:0046872
Psa6g5121 428 MobiDBLite consensus disorder prediction 225 245 - -
Psa6g5121 428 ProSiteProfiles Zinc finger C3H1-type profile. 327 355 IPR000571 GO:0046872
Psa6g5121 428 SUPERFAMILY CCCH zinc finger 362 392 IPR036855 GO:0046872
Psa6g5121 428 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 52 233 - -
Psa6g5121 428 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 235 403 - -
Psa6g5121 428 MobiDBLite consensus disorder prediction 176 211 - -
Psa6g5121 428 Gene3D - 321 359 - -
Psa6g5121 428 Gene3D - 361 397 - -
Psa6g5121 428 MobiDBLite consensus disorder prediction 42 61 - -
Psa6g5121 428 PANTHER CCCH ZINC FINGER/TIS11-RELATED 235 403 IPR045877 GO:0003729
Psa6g5121 428 PANTHER CCCH ZINC FINGER/TIS11-RELATED 52 233 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5121 Psa-Chr6 441406835 441409663 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5121 99 400 C3H Transcription Factor Family AT1G68200 40.391 3.06e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa6g5121 zf-CCCH 4.4e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5121 K18753 - gmx:100796550 321.242