Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5120 ATGCATAACAAGGACGTTTGTTCTCCCTCATCTCAAAGCGGATTCGGCGTCCGCCTCAACGCCGCCGGTCACATGCAGTCGAACGCCGGCGCGTTTGCTTCGTTGTACTCTGCTCTGACTAACGAGCTCTCGGGAAACTGCAGCAACGGCGGAGGAGGATTGCTTTATCCGTACTCTGACTCTGGAGCTGATTACGACTCGTCGTGCGTGATACAGAAGCATCAGGATATGGTGAATCGTCACAGTATGTGTCTCAGTCGCCTAGTGGAGACATCCAAAGAGGTCGAAGCTCTGCAGCAAGAGAACGGACAGCTCCGTGCCGTGAACAAGGAGTTGCAGAAGAATCTGAACCTTCTCGTTCAGGCTTCTCTGGAGAATCGATTTGGCGGCGGTGACTCCTCCATCCAGACACATTCGATCCCGTTTGATGCCTTGCACAGTTTCCGCGGTTTGAATCTTGGCGATGGAAAAGAAAACTGTGCTGATTGGAATAACAATAACATCAATAATAATAACAAGGAGCTTCTGGAAGCTTCGGATGAGAGTCCAACGAGTGTGATAGATAATGGCGGTATTGAAACAGAGAGGTTCTCTCTTCCGAAAAGCATATCTGTGAGATCCAATGGCTACTTGAAGATTGCTCAGCCTCCGGCCGTCGTAACTAACAATAATGCTTGTCGCAGCACCAAAGGCGCTATCCGCTCCCGCGCGTCTTCCACTCAACCTGATGCAGTTCAAAAGGTATATGTGCGAGGAGGAGGGCAGAAAGAGGAAGAGCCTCTTGAGATGACTGTGTATAACCAGGGGATGTTCAAGACTGAGCTGTGTAACAAATGGCAGGAAACTGGCACATGCCCTTATAATGACCACTGTCAATTCGCTCACGGTATCGGGGAGCTTCGCCCGGTGATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTTTGTCCCTATGGCCATAGATGTCATTTCCGTCATGCCCTTACTGAGCAAGAGAAAGCTATATCACAATCTACGCCCAGATCAAGGAAGCTGGAAAGATAA 1065 0.5023 MHNKDVCSPSSQSGFGVRLNAAGHMQSNAGAFASLYSALTNELSGNCSNGGGGLLYPYSDSGADYDSSCVIQKHQDMVNRHSMCLSRLVETSKEVEALQQENGQLRAVNKELQKNLNLLVQASLENRFGGGDSSIQTHSIPFDALHSFRGLNLGDGKENCADWNNNNINNNNKELLEASDESPTSVIDNGGIETERFSLPKSISVRSNGYLKIAQPPAVVTNNNACRSTKGAIRSRASSTQPDAVQKVYVRGGGQKEEEPLEMTVYNQGMFKTELCNKWQETGTCPYNDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAISQSTPRSRKLER* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5120 354 SUPERFAMILY CCCH zinc finger 267 302 IPR036855 GO:0046872
Psa6g5120 354 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 60 346 - -
Psa6g5120 354 Coils Coil 88 115 - -
Psa6g5120 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 296 IPR000571 GO:0046872
Psa6g5120 354 SUPERFAMILY CCCH zinc finger 304 338 IPR036855 GO:0046872
Psa6g5120 354 ProSiteProfiles Zinc finger C3H1-type profile. 308 336 IPR000571 GO:0046872
Psa6g5120 354 Gene3D - 264 303 - -
Psa6g5120 354 Gene3D - 304 340 - -
Psa6g5120 354 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Psa6g5120 354 PANTHER CCCH ZINC FINGER/TIS11-RELATED 60 346 IPR045877 GO:0003729
Psa6g5120 354 SMART c3hfinal6 270 297 IPR000571 GO:0046872
Psa6g5120 354 SMART c3hfinal6 308 335 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5120 Psa-Chr6 441381621 441383824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5120 70 343 C3H Transcription Factor Family AT1G68200 50.534 5.43e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa6g5120 zf-CCCH 7.3e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5120 K18753 - gmx:100796550 483.796