Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5110 ATGTCAAGTGGAAGGAAAGGCCGAGGTCGCAAAAAGACTGAGATGAAAAAGATGAGCAATGAAAGCCACTTGCAAGTGACTTTCTCAAAGCGTCGTAGTGGACTCTTTAAGAAAGCTAGTGAACTTTGCACCCTTTGTGGTGTAGATATTGCTCTTGTTGTATTTTCGCCTAGTGAAAAGGTATTTTCTTTTGGTCATCCCGATATTTACACGGTCATAGATCGGTATCTTTCTCACATTTCACCTCAAAACAACGACACAATGCAATTTATTGAGACTCGTCGTTGTGCCAACGTGCGCGAGCTTAACGCTCAACTAACTCAAATCAACAACACACTGGATGTCGAGAAGAAGCTTTGTGATGAACTAAGTCGTATTCACAAGGCGGTCGAGGCTCAGTTTTGGTGGGCTTGTCCATTTGATGGAATGAATATGGCTCAACTTGAATTATTAAAGAAAGCTTTTGAGCAACTTAAGATTCTTGTTGTTGAACATGCTGACAAGGTTATAACTCAAGGTGCTCCTAGTCAAACTCTTCCAGCTTTTGTCGGCAATGATTCATCTTCTAACATTTATTTTCATCATCATCCAAATCCTCAACAACCTCAAATGTTTCAACCAGAACATTTTCAAAATCCTATGTTACAACCTCATTTGTTTGATGGATCGATGATGACTCACAATGACTTCATCAATATGGTTCTATAA 708 0.3941 MSSGRKGRGRKKTEMKKMSNESHLQVTFSKRRSGLFKKASELCTLCGVDIALVVFSPSEKVFSFGHPDIYTVIDRYLSHISPQNNDTMQFIETRRCANVRELNAQLTQINNTLDVEKKLCDELSRIHKAVEAQFWWACPFDGMNMAQLELLKKAFEQLKILVVEHADKVITQGAPSQTLPAFVGNDSSSNIYFHHHPNPQQPQMFQPEHFQNPMLQPHLFDGSMMTHNDFINMVL* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5110 235 MobiDBLite consensus disorder prediction 1 24 - -
Psa6g5110 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Psa6g5110 235 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Psa6g5110 235 Gene3D - 88 176 - -
Psa6g5110 235 CDD MADS_MEF2_like 9 83 IPR033896 GO:0000977|GO:0045944
Psa6g5110 235 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Psa6g5110 235 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Psa6g5110 235 PANTHER MADS BOX PROTEIN 7 183 - -
Psa6g5110 235 SUPERFAMILY SRF-like 9 87 IPR036879 GO:0003677|GO:0046983
Psa6g5110 235 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Psa6g5110 235 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Psa6g5110 235 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Psa6g5110 235 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 183 - -
Psa6g5110 235 Coils Coil 99 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5110 Psa-Chr6 440759289 440759996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5110 5 193 Type I MADS-box Gene Family AT5G60440 48.438 2.39e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa6g5110 SRF-TF 4.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5110 - - mtr:MTR_1g106070 270.011