Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5107 ATGTCAAGCGGAAGGAAAGGTCGAGGTCGCCAAAAGATAGAGATGAAAAAGATGAGCAACGAGAGCCATTTGCAAGTGACTTTCTCAAAGCGTCGTAGCGGACTCTTCAAGAAAGCTAGTGAACTTTGCACCCTTTGTGGTATAGATATTGCTCTTGTTGTATTTTCACCTAACGAGAAAGTATTTTCTTTTGGTCATCCCAATATTTATACGGTCATAAATCGGTATCTTTCTCAGATCCCACCCCAAAACAAAAATACACTGCAATTTATTGAGGCTCGCCGCAGCGCCAACGTGCGCGATCTTAATGCTCAACTAACTGAATTCAACAACAAATTGGATGCTGAAAAGAAGCTTGGTGATGAGCTAAGTCGTATTCGCAAGGCGGTTGAAGCACAATTTTGGTGGGCTTGTCCGTTTGATTGCATGAACATGGCTCAACTTGAATTATTGAAGAAAGCTTTGGAGCAACTTAAGATTCTTGTTGTTGAACGTGCTGACAAGGTTTTAATTCAGGACACTCCTAGTCAAACTCTTTCAACTTTTTTTGGCAATAATTCATCTTCTAACATTTATTTCCATCATCAACAAAATCATGAGCAACCTCAAATGTTTCAACCACAACATTTTCAAAGCCCTATATTACAACCTCATTTGTTTGATGGATCAATGATGACTTACGATGACTTTATCAATATGGTTCTGTAA 708 0.3898 MSSGRKGRGRQKIEMKKMSNESHLQVTFSKRRSGLFKKASELCTLCGIDIALVVFSPNEKVFSFGHPNIYTVINRYLSQIPPQNKNTLQFIEARRSANVRDLNAQLTEFNNKLDAEKKLGDELSRIRKAVEAQFWWACPFDCMNMAQLELLKKALEQLKILVVERADKVLIQDTPSQTLSTFFGNNSSSNIYFHHQQNHEQPQMFQPQHFQSPILQPHLFDGSMMTYDDFINMVL* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5107 235 PANTHER MADS BOX PROTEIN 7 183 - -
Psa6g5107 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Psa6g5107 235 Gene3D - 88 177 - -
Psa6g5107 235 MobiDBLite consensus disorder prediction 1 20 - -
Psa6g5107 235 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Psa6g5107 235 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Psa6g5107 235 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Psa6g5107 235 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Psa6g5107 235 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Psa6g5107 235 Coils Coil 99 119 - -
Psa6g5107 235 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Psa6g5107 235 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Psa6g5107 235 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Psa6g5107 235 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5107 Psa-Chr6 440674984 440675999 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5107 5 193 Type I MADS-box Gene Family AT5G60440 50.521 2.26e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa6g5107 SRF-TF 7.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5107 - - gmx:100780445 263.077