Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5049 ATGAAGCCACCACAACCTCCTGCTCCAATTCCATCACGACCGCCTTCTCATGTTGCTCCGCCACTGCCTCCTCTCATGAGCAGCAGTGGTGGTACCGGCTCAAACTATTCAGGCGGCGAACTACTTCCACCTCCTTCTCCAGGCCTTGCATTTAGCACTGCGAAGAGTACGTTTACATACGAGGAGTTGGCGCGCGCAACGGATGGCTTCTCTGATGCTAACCTCCTTGGACAAGGTGGATTTGGATATGTTCATAGAGGTATTCTCCCTAATGGTAAAGAGGTTGCTGTTAAGCAGCTGAAAGCTGGAAGTGGACAAGGAGAACGTGAATTTCAAGCTGAAGTAGAGATTATTAGCCGTGTTCATCATAAACATCTTGTTTCTCTTGTTGGATACTGCAGCACCGGGTTTCAGAGGCTACTTGTTTATGAGTTTGTTCCCAACAATACATTGGAATTTCATTTACATGGAAATGGACGACCAACGATGGATTGGCCAACAAGATTGCGAATTGCTTTAGGATCTGCAAAAGGACTTGCTTATCTTCATGAAGATTGTCATCCTAAGATCATTCATCGTGATATTAAAGCTGCTAACATCCTTCTCGATTTTAAGTTTGAAGCAAAGGTTGCTGATTTTGGTCTTGCAAAGATTGCTTCCGATCTCAACACTCATGTTTCTACTCGAGTGATGGGGACTTTTGGGTATCTGGCTCCAGAATATGCAGCAAGTGGAAAACTTACAGACAAATCAGATGTTTTCTCTTATGGAGTCATGCTCCTTGAGCTATTAACTGGACGTCGACCGGTTGATAAAAATCAGACTTACATGGATGATAGTTTGGTGGAATGGGCTAGGCCTTTGCTCATGCGTGCTTTAGAAGAAAATAATTTAGATTCTCTGATTGATCCAAGACTTCAGAATGAATTTGACCCTAGTGAGATGACGCGTATGGTAGCATGTGCTGCAGCTTGCACACGCCACTCAGCAAAGCGTCGACCAAGGATGAGCCAGGTTGTGCGTGCCTTAGAAGGAGACGTGTCACTAGCAGATCTTAATGAAGGAGTAAGACCTGGACACAGCAGTGTCTACAGTTCTCACGAAAGGTGGATTCAGAGCTACAATTCAAATTTTTTTGTTTTGCAGGCATATCAAGAGGAGACTGAATAG 1170 0.4453 MKPPQPPAPIPSRPPSHVAPPLPPLMSSSGGTGSNYSGGELLPPPSPGLAFSTAKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCSTGFQRLLVYEFVPNNTLEFHLHGNGRPTMDWPTRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKIASDLNTHVSTRVMGTFGYLAPEYAASGKLTDKSDVFSYGVMLLELLTGRRPVDKNQTYMDDSLVEWARPLLMRALEENNLDSLIDPRLQNEFDPSEMTRMVACAAACTRHSAKRRPRMSQVVRALEGDVSLADLNEGVRPGHSSVYSSHERWIQSYNSNFFVLQAYQEETE* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5049 389 ProSiteProfiles Protein kinase domain profile. 70 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5049 389 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524
Psa6g5049 389 SUPERFAMILY Protein kinase-like (PK-like) 49 343 IPR011009 -
Psa6g5049 389 MobiDBLite consensus disorder prediction 1 22 - -
Psa6g5049 389 Gene3D Phosphorylase Kinase; domain 1 46 145 - -
Psa6g5049 389 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 4 376 - -
Psa6g5049 389 Pfam Protein tyrosine and serine/threonine kinase 75 343 IPR001245 GO:0004672|GO:0006468
Psa6g5049 389 MobiDBLite consensus disorder prediction 1 33 - -
Psa6g5049 389 SMART serkin_6 70 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g5049 389 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 4 376 - -
Psa6g5049 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Psa6g5049 389 Gene3D Transferase(Phosphotransferase) domain 1 146 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5049 Psa-Chr6 437267789 437270650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5049 23 379 Trihelix Transcription Factor Family AT5G38560 60.108 1.14e-156 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Psa6g5049 PK_Tyr_Ser-Thr 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5049 - - gmx:100781944 630.557