Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5029 ATGACATATATCACAGAAAACATTATTGCAATGGGATTCCCTGCCGGTGACATGAGCTCTGGGTTTTTTGGTTATGTGGAAGGATTTTACAGAAATCATATGGAAGAAGTGATCAAGTTTTTTGAAACTAACCATAAGGGTAAATACAAAGTGTATAATCTCTGTTTGGAACGGCTGTATGATGCATCATTGTTCGAGGGGAAGGTGGCTAGCTTCCCATTTGATGACCATAATTGCCCACCGATTCAACTGATTGTATCATTTTGTCAAAGTGCTTACTCATGGTTGAAACAAGACATTGAGAATGTGGTGGTTGTCCACTGTAAAGCAGGAATGGCCAGGACAGGGTTGATGATTTCCAGTCTTCTACTATTCTTAAAGTTCTTCCCAACTGCTGAGGAGTCAATGGATTATTATAATCAGAAACGCTGTATTGATGGAAAAGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAGTATTTTGAACGGATCCTGACTTACTTTAATGGCGAATGTCCACCTCCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGTCCTTACTGGATCCGACCCTCTATAACCATTTCAAATCATAATGGTGTGTTGTTCTCAACCAAAAAGCATTCAAGAACCAAAGATCTTTTGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGAGTTATGGTCTTTGCTTTGCCTGGAGAACCTGGTCTCACAGAGTTGGCTGGTGACTTCAAAATTCACTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTAAACACAACTATGACAGAAAACAGGAAAATTTTGATCACCAGTGATCTCGATGGCTTTGACAAGAGAAAATTGCCTTCTCCAGGATTCCAGGTTGAGGTTGTGCTGGCGGACTATAATGGCAATGTTGTAACTTCCAATCCTGAAGCTACGAAGAAATCAGACGAGAGTTCAAGCAAAAGTCCTGCCCCAGCTGAGACGAACACCCCCGCACCAAATGCAGACAAAGAGTCAGGGGATGGGGATCAAGACAAAGATGACGATGTATTTTCAGACGGTGAGGCAGACCATCCCGCTTCTTCCCAAAGCAAGCAAACAAAGGCACCTTCTGAAGCAGTTGCAACAGTTGCTAGTGCCACCAAAGAGTCCGAGGCTAACAAAACTTCAAATCAAATAACAAATATAACTCATGCAACAGAACAAGTTTCTTTGGGTAGTAAGATCTCTACACCAAGTCATAGTACTGGTGAGCCAAAGAGTGATGTTGGTGGAAAAACTGTGTCCAGTCTCGACGGGCCCAGCTCAGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTGTTTACGTTCGGAGATGATGAAGACTATGAAAGTGATTGA 1395 0.428 MTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETNHKGKYKVYNLCLERLYDASLFEGKVASFPFDDHNCPPIQLIVSFCQSAYSWLKQDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCIDGKGLVLPSQIRYVKYFERILTYFNGECPPPRRCMLRGFRLHRCPYWIRPSITISNHNGVLFSTKKHSRTKDLLPEDFWFTAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKILITSDLDGFDKRKLPSPGFQVEVVLADYNGNVVTSNPEATKKSDESSSKSPAPAETNTPAPNADKESGDGDQDKDDDVFSDGEADHPASSQSKQTKAPSEAVATVASATKESEANKTSNQITNITHATEQVSLGSKISTPSHSTGEPKSDVGGKTVSSLDGPSSESEFKAMAADASVFTFGDDEDYESD* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5029 464 ProSiteProfiles C2 tensin-type domain profile. 176 303 IPR014020 -
Psa6g5029 464 CDD PTP_PTEN 1 165 IPR045101 GO:0016791
Psa6g5029 464 ProSiteProfiles Phosphatase tensin-type domain profile. 1 169 IPR029023 -
Psa6g5029 464 Gene3D Protein tyrosine phosphatase superfamily 1 172 IPR029021 -
Psa6g5029 464 MobiDBLite consensus disorder prediction 310 338 - -
Psa6g5029 464 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 104 143 IPR000387 GO:0016311|GO:0016791
Psa6g5029 464 MobiDBLite consensus disorder prediction 360 439 - -
Psa6g5029 464 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 1 464 - -
Psa6g5029 464 SMART PTEN_C2_2 174 302 IPR014020 -
Psa6g5029 464 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 3 172 IPR029021 -
Psa6g5029 464 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 464 - -
Psa6g5029 464 ProSitePatterns Tyrosine specific protein phosphatases active site. 106 116 IPR016130 GO:0016311|GO:0016791
Psa6g5029 464 MobiDBLite consensus disorder prediction 310 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5029 Psa-Chr6 435577739 435585007 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5029 1 464 Protein tyrosine phosphatase (PTP) family AT3G19420 70.975 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5029 K01110 - gmx:100784003 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5029 6 435577739 435585007 Psa6g5029 6 435577739 435585007 ECH
Psa2g3819 2 403624585 403631960 Psa6g5029 6 435577739 435585007 PCT