Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5028 ATGGCAATCCATCATCACCACCACCATCATCAACAACTACACCACAACTCTCTTCTTGATGCTCTTTACTGCGATGAAGAAAAACTCGAAGAAGAACAAGAAGACGTTTCATCTCAACAAAGTGATGTCACAACAAACAATGACAGCAACATCCTAGACTCCACTTCCCTGTTCCCTCTTCTTCTCCTGGAACAAAACCTCTTCTCTCAAGATGAAGAACTCACCACACTTTTCTCCAAAGAAAAAACCCAACAAGAAACATACTACGAGGATCTGAAAAATGTCGTGGATTTTGTTTCTCTCTCTCAACCTCGTCGTGAAGCTGTTCAATGGATGCTTAAAGTCAATGCTCATTACGCCTTTTCACCTCTCACTGCAACACTCGCTGTTACTTACTTTGATAGGTTCCTTCTAACCTTCCATTTCCAAAAGGATAAGCCATGGATGATTCAGCTTGTTGCTGTTACTTGCATCTCTTTAGCTGCTAAAGTTGAAGAAACTCAAGTTCCTCTCCTCTTAGACCTACAAGTGCAAGATACTAAATATGTGTTTGAAGCAAAAACTATTCAGAGAATGGAGCTTTTGATTCTGTCAACACTGAAATGGAAGATGCATCCTGTGACACCACACTCTTTTCTAGATCATATAATAACAAGGCTTGGTTTGAAAACTAATCTTCATTGGGAGTTTTTAAGACGCTGTGAGAATCTTCTTCTATCTGTACTTTTAGATTCAAGATTTGTTGGTTGTGTTCCCTCTGTGTTGGCTACTGCTACAATGCTGCATGTGATAGACCAGATTGAAGAGAGTGATGATAATGGCGTGGACTACAAAAATCAGCTTCTTAGTATTCTCAAAATCAACAAGGAGAAAGTGGATGAATGTTATAATGCTATTGTTGAGGTTACTAATGAAAATAATTATGGTCATAAACGAAAATATGAACAAATCCCTGGAAGTCCAAGTGGCGTAATTGATGCTGTTTTTAGTTCTGATGGTTCCAATGATTCATGGAAAGTGGGTTCATCCTCGTATTCAACCTCAGAGCCTGTTTTTAAGAAAACAAAAACTCAAGGGCAAAATAGGAATTTGTCACCTCTTAATAGGGTCATTGTTGGAATTCTTGCCACTGCTAGTGCTACTACCTCTCCTTAA 1155 0.3887 MAIHHHHHHHQQLHHNSLLDALYCDEEKLEEEQEDVSSQQSDVTTNNDSNILDSTSLFPLLLLEQNLFSQDEELTTLFSKEKTQQETYYEDLKNVVDFVSLSQPRREAVQWMLKVNAHYAFSPLTATLAVTYFDRFLLTFHFQKDKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLILSTLKWKMHPVTPHSFLDHIITRLGLKTNLHWEFLRRCENLLLSVLLDSRFVGCVPSVLATATMLHVIDQIEESDDNGVDYKNQLLSILKINKEKVDECYNAIVEVTNENNYGHKRKYEQIPGSPSGVIDAVFSSDGSNDSWKVGSSSYSTSEPVFKKTKTQGQNRNLSPLNRVIVGILATASATTSP* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5028 384 SMART cyclin_7 110 198 IPR013763 -
Psa6g5028 384 Pfam Cyclin, C-terminal domain 207 315 IPR004367 -
Psa6g5028 384 PANTHER CYCLIN D3.1 PROTEIN 41 354 - -
Psa6g5028 384 SMART Cyclin_C_2 207 323 IPR004367 -
Psa6g5028 384 Pfam Cyclin, N-terminal domain 93 204 IPR006671 -
Psa6g5028 384 CDD CYCLIN 105 197 IPR013763 -
Psa6g5028 384 PANTHER CYCLINS 41 354 IPR039361 -
Psa6g5028 384 ProSitePatterns Cyclins signature. 105 136 IPR006671 -
Psa6g5028 384 Gene3D - 206 299 - -
Psa6g5028 384 Gene3D - 102 205 - -
Psa6g5028 384 SUPERFAMILY Cyclin-like 70 205 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5028 Psa-Chr6 435561543 435563872 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5028 1 302 Core Cell Cycle Gene Families AT4G34160 54.305 2.13e-109 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5028 K14505 - gmx:547740 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5028 6 435561543 435563872 Psa6g5028 6 435561543 435563872 ECH
Psa5g0978 5 73530992 73533154 Psa6g5028 6 435561543 435563872 ECH