Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g5005 ATGGGTAGCCTTGAAGCTGCTGAAAGGACAACAGTTGGATTGGCTGCAACCGACCCTTCCGGAATTCTAACTCCCTATACTTACACTCTTAGAAACACAGGAGCAGATGATGTCTACATCAAAATTTATTACTGTGGAGTTTGTCATTCTGATCTTCACCAAATCAAAAATGATCTTGGCATGTCCAATTATCCCATGGTTCCCGGGCATGAAGTGGTTGGTGAGGTACTAGAGGTGGGATCAAATGTCACCAGATTCAGTGTAGGAGAAATTGTGGGAGTTGGACTTCTTGTTGGTTGCTGCAAAAACTGCAGGGCTTGTGATTCGGATATTGAACAATATTGTAACAAGAAGATCTGGTCTTACAATGATGTTTATACAGACGGAAAAATCACTCAGGGTGGTTTCGCCGAAACCACCGTCGTCGAACAGAAGTTCGTTGTGAAAATTCCAGAGGGATTGGCACCAGAGCAAGCAGCACCATTGTTATGTGCTGGTGTGACAGTGTACAGTCCACTTGCACATTTTGGGCTGAAACAAAGTGGGCTAAGAGGTGGAATATTGGGCCTGGGAGGTGTAGGACACATGGGGGTGAAAGTAGCAAAAGCATTCGGTCACCATGTGACTGTGATAAGTTCTTCCGATAAGAAGAAGAAAGAAGCAATTGAGGATCTTGGAGCTGACAATTATGTTGTTAGCTCAGACACAAGTGCCATGCAAGAAATTGCTGATTCACTTGATTATATTATTGATACTGTTCCTGTTGGTCACCCTCTTGAGCCTTATCTTGCATTGCTTAAAGTTGATGGAAAATTGATCTTGATGGGTGTTATTAACACCCCTCTTCAATTTGTCACACCTATGGTCATGCTAGGGAGGAAGACGATTACC 891 0.4343 MGSLEAAERTTVGLAATDPSGILTPYTYTLRNTGADDVYIKIYYCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGSNVTRFSVGEIVGVGLLVGCCKNCRACDSDIEQYCNKKIWSYNDVYTDGKITQGGFAETTVVEQKFVVKIPEGLAPEQAAPLLCAGVTVYSPLAHFGLKQSGLRGGILGLGGVGHMGVKVAKAFGHHVTVISSSDKKKKEAIEDLGADNYVVSSDTSAMQEIADSLDYIIDTVPVGHPLEPYLALLKVDGKLILMGVINTPLQFVTPMVMLGRKTIT 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g5005 297 PANTHER ALDEHYDE REDUCTASE 5 297 - -
Psa6g5005 297 SUPERFAMILY GroES-like 17 182 IPR011032 -
Psa6g5005 297 Gene3D - 15 164 - -
Psa6g5005 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 296 IPR036291 -
Psa6g5005 297 CDD CAD1 12 297 - -
Psa6g5005 297 Pfam Zinc-binding dehydrogenase 192 296 IPR013149 -
Psa6g5005 297 Gene3D - 165 296 - -
Psa6g5005 297 Pfam Alcohol dehydrogenase GroES-like domain 36 150 IPR013154 -
Psa6g5005 297 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Psa6g5005 297 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 5 297 - -
Psa6g5005 297 SMART PKS_ER_names_mod 21 296 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g5005 Psa-Chr6 434318172 434319741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g5005 1 297 Monolignol Biosynthesis Gene Families AT3G19450 78.788 4.73e-159 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g5005 K00083 - gmx:100777558 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g5005 6 434318172 434319741 Psa6g5005 6 434318172 434319741 ECH